Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3340 and Shewana3_3341 overlap by 17 nucleotides Shewana3_3341 and Shewana3_3342 are separated by 84 nucleotides Shewana3_3342 and Shewana3_3343 overlap by 8 nucleotides
Shewana3_3340: Shewana3_3340 - putative PAS/PAC sensor protein (RefSeq), at 4,008,025 to 4,010,259
_3340
Shewana3_3341: Shewana3_3341 - hypothetical protein (RefSeq), at 4,010,243 to 4,011,640
_3341
Shewana3_3342: Shewana3_3342 - hypothetical protein (RefSeq), at 4,011,725 to 4,012,255
_3342
Shewana3_3343: Shewana3_3343 - lysine decarboxylase transcriptional regulator, CadC (RefSeq), at 4,012,248 to 4,012,991
_3343
Position (kb) 4010
4011
4012 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4009.327 kb on - strand, within Shewana3_3340 at 4009.327 kb on - strand, within Shewana3_3340 at 4009.327 kb on - strand, within Shewana3_3340 at 4009.691 kb on + strand, within Shewana3_3340 at 4009.787 kb on + strand, within Shewana3_3340 at 4009.996 kb on - strand, within Shewana3_3340 at 4010.097 kb on + strand at 4010.192 kb on - strand at 4010.326 kb on - strand at 4010.361 kb on - strand at 4010.461 kb on + strand, within Shewana3_3341 at 4010.938 kb on - strand, within Shewana3_3341 at 4010.945 kb on - strand, within Shewana3_3341 at 4011.084 kb on + strand, within Shewana3_3341 at 4011.084 kb on + strand, within Shewana3_3341 at 4011.269 kb on - strand, within Shewana3_3341 at 4011.293 kb on - strand, within Shewana3_3341 at 4011.294 kb on - strand, within Shewana3_3341 at 4011.403 kb on + strand, within Shewana3_3341 at 4011.519 kb on + strand at 4011.760 kb on - strand at 4011.776 kb on + strand at 4011.784 kb on - strand, within Shewana3_3342 at 4011.802 kb on - strand, within Shewana3_3342 at 4011.812 kb on + strand, within Shewana3_3342 at 4011.820 kb on + strand, within Shewana3_3342 at 4011.820 kb on + strand, within Shewana3_3342 at 4011.828 kb on - strand, within Shewana3_3342 at 4011.828 kb on - strand, within Shewana3_3342 at 4011.828 kb on - strand, within Shewana3_3342 at 4011.864 kb on + strand, within Shewana3_3342 at 4011.970 kb on + strand, within Shewana3_3342 at 4011.986 kb on - strand, within Shewana3_3342 at 4011.986 kb on - strand, within Shewana3_3342 at 4011.986 kb on - strand, within Shewana3_3342 at 4012.067 kb on + strand, within Shewana3_3342 at 4012.124 kb on + strand, within Shewana3_3342 at 4012.181 kb on - strand, within Shewana3_3342 at 4012.268 kb on + strand at 4012.268 kb on + strand at 4012.276 kb on - strand at 4012.276 kb on - strand at 4012.409 kb on - strand, within Shewana3_3343 at 4012.437 kb on + strand, within Shewana3_3343 at 4012.437 kb on + strand, within Shewana3_3343
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 4,009,327 - Shewana3_3340 0.58 +1.0 4,009,327 - Shewana3_3340 0.58 +1.0 4,009,327 - Shewana3_3340 0.58 -0.6 4,009,691 + Shewana3_3340 0.75 -0.0 4,009,787 + Shewana3_3340 0.79 -0.8 4,009,996 - Shewana3_3340 0.88 -0.3 4,010,097 + +0.2 4,010,192 - +0.4 4,010,326 - -2.1 4,010,361 - -1.8 4,010,461 + Shewana3_3341 0.16 -2.5 4,010,938 - Shewana3_3341 0.50 -2.1 4,010,945 - Shewana3_3341 0.50 -2.8 4,011,084 + Shewana3_3341 0.60 -2.8 4,011,084 + Shewana3_3341 0.60 -3.1 4,011,269 - Shewana3_3341 0.73 -1.8 4,011,293 - Shewana3_3341 0.75 -2.0 4,011,294 - Shewana3_3341 0.75 -1.8 4,011,403 + Shewana3_3341 0.83 -2.6 4,011,519 + -2.9 4,011,760 - -0.3 4,011,776 + -0.7 4,011,784 - Shewana3_3342 0.11 -0.6 4,011,802 - Shewana3_3342 0.15 -0.2 4,011,812 + Shewana3_3342 0.16 +0.4 4,011,820 + Shewana3_3342 0.18 -0.8 4,011,820 + Shewana3_3342 0.18 -0.0 4,011,828 - Shewana3_3342 0.19 +0.6 4,011,828 - Shewana3_3342 0.19 +0.4 4,011,828 - Shewana3_3342 0.19 +0.5 4,011,864 + Shewana3_3342 0.26 +0.3 4,011,970 + Shewana3_3342 0.46 -0.4 4,011,986 - Shewana3_3342 0.49 +0.3 4,011,986 - Shewana3_3342 0.49 -0.3 4,011,986 - Shewana3_3342 0.49 +0.2 4,012,067 + Shewana3_3342 0.64 -0.2 4,012,124 + Shewana3_3342 0.75 +0.4 4,012,181 - Shewana3_3342 0.86 -0.3 4,012,268 + +0.7 4,012,268 + +0.2 4,012,276 - -0.8 4,012,276 - +0.4 4,012,409 - Shewana3_3343 0.22 +0.3 4,012,437 + Shewana3_3343 0.25 +0.1 4,012,437 + Shewana3_3343 0.25 -1.3
Or see this region's nucleotide sequence