Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3116

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3115 and Shewana3_3116 are separated by 28 nucleotidesShewana3_3116 and Shewana3_3117 overlap by 1 nucleotides Shewana3_3115: Shewana3_3115 - beta-N-acetylhexosaminidase (RefSeq), at 3,735,922 to 3,738,729 _3115 Shewana3_3116: Shewana3_3116 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,738,758 to 3,740,245 _3116 Shewana3_3117: Shewana3_3117 - hypothetical protein (RefSeq), at 3,740,245 to 3,741,234 _3117 Position (kb) 3738 3739 3740 3741Strain fitness (log2 ratio) -2 -1 0 1at 3737.800 kb on - strand, within Shewana3_3115at 3737.836 kb on + strand, within Shewana3_3115at 3737.844 kb on - strand, within Shewana3_3115at 3737.978 kb on + strand, within Shewana3_3115at 3737.995 kb on - strand, within Shewana3_3115at 3738.176 kb on - strand, within Shewana3_3115at 3738.216 kb on - strand, within Shewana3_3115at 3738.250 kb on - strand, within Shewana3_3115at 3738.549 kb on - strandat 3738.583 kb on - strandat 3738.693 kb on - strandat 3738.848 kb on - strandat 3738.865 kb on - strandat 3738.906 kb on + strandat 3738.911 kb on + strand, within Shewana3_3116at 3738.988 kb on + strand, within Shewana3_3116at 3739.034 kb on + strand, within Shewana3_3116at 3739.034 kb on + strand, within Shewana3_3116at 3739.120 kb on + strand, within Shewana3_3116at 3739.373 kb on - strand, within Shewana3_3116at 3739.405 kb on - strand, within Shewana3_3116at 3739.502 kb on - strand, within Shewana3_3116at 3739.548 kb on + strand, within Shewana3_3116at 3739.736 kb on - strand, within Shewana3_3116at 3739.736 kb on - strand, within Shewana3_3116at 3739.736 kb on - strand, within Shewana3_3116at 3739.860 kb on + strand, within Shewana3_3116at 3739.868 kb on - strand, within Shewana3_3116at 3740.179 kb on - strandat 3740.349 kb on + strand, within Shewana3_3117at 3740.357 kb on - strand, within Shewana3_3117at 3740.551 kb on - strand, within Shewana3_3117at 3740.820 kb on - strand, within Shewana3_3117at 3740.958 kb on + strand, within Shewana3_3117at 3740.966 kb on - strand, within Shewana3_3117at 3741.139 kb on - strandat 3741.231 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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3,737,800 - Shewana3_3115 0.67 -0.6
3,737,836 + Shewana3_3115 0.68 -1.7
3,737,844 - Shewana3_3115 0.68 -1.1
3,737,978 + Shewana3_3115 0.73 +0.2
3,737,995 - Shewana3_3115 0.74 +0.4
3,738,176 - Shewana3_3115 0.80 -0.2
3,738,216 - Shewana3_3115 0.82 -0.8
3,738,250 - Shewana3_3115 0.83 +0.3
3,738,549 - -0.5
3,738,583 - -0.4
3,738,693 - +0.1
3,738,848 - -1.1
3,738,865 - +0.0
3,738,906 + -0.3
3,738,911 + Shewana3_3116 0.10 -0.9
3,738,988 + Shewana3_3116 0.15 -0.0
3,739,034 + Shewana3_3116 0.19 +0.1
3,739,034 + Shewana3_3116 0.19 -0.7
3,739,120 + Shewana3_3116 0.24 -1.4
3,739,373 - Shewana3_3116 0.41 -0.4
3,739,405 - Shewana3_3116 0.43 -2.0
3,739,502 - Shewana3_3116 0.50 +0.9
3,739,548 + Shewana3_3116 0.53 +0.9
3,739,736 - Shewana3_3116 0.66 -0.9
3,739,736 - Shewana3_3116 0.66 +1.7
3,739,736 - Shewana3_3116 0.66 -0.1
3,739,860 + Shewana3_3116 0.74 +0.3
3,739,868 - Shewana3_3116 0.75 +0.1
3,740,179 - +0.5
3,740,349 + Shewana3_3117 0.11 -1.7
3,740,357 - Shewana3_3117 0.11 +0.1
3,740,551 - Shewana3_3117 0.31 +0.4
3,740,820 - Shewana3_3117 0.58 -0.6
3,740,958 + Shewana3_3117 0.72 +0.0
3,740,966 - Shewana3_3117 0.73 +0.2
3,741,139 - +0.6
3,741,231 + +0.4

Or see this region's nucleotide sequence