Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3080

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3078 and Shewana3_3079 are separated by 84 nucleotidesShewana3_3079 and Shewana3_3080 are separated by 18 nucleotidesShewana3_3080 and Shewana3_3081 are separated by 49 nucleotidesShewana3_3081 and Shewana3_3082 are separated by 261 nucleotides Shewana3_3078: Shewana3_3078 - ribosomal RNA large subunit methyltransferase A, putative (RefSeq), at 3,692,017 to 3,692,856 _3078 Shewana3_3079: Shewana3_3079 - undecaprenyl pyrophosphate phosphatase (RefSeq), at 3,692,941 to 3,693,741 _3079 Shewana3_3080: Shewana3_3080 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (RefSeq), at 3,693,760 to 3,694,269 _3080 Shewana3_3081: Shewana3_3081 - dihydroneopterin aldolase (RefSeq), at 3,694,319 to 3,694,669 _3081 Shewana3_3082: Shewana3_3082 - putative glycerol-3-phosphate acyltransferase PlsY (RefSeq), at 3,694,931 to 3,695,542 _3082 Position (kb) 3693 3694 3695Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3693.224 kb on + strand, within Shewana3_3079at 3693.277 kb on + strand, within Shewana3_3079at 3693.368 kb on + strand, within Shewana3_3079at 3693.399 kb on - strand, within Shewana3_3079at 3693.496 kb on - strand, within Shewana3_3079at 3693.512 kb on + strand, within Shewana3_3079at 3693.606 kb on - strand, within Shewana3_3079at 3693.617 kb on - strand, within Shewana3_3079at 3693.627 kb on + strand, within Shewana3_3079at 3693.630 kb on - strand, within Shewana3_3079at 3693.783 kb on + strandat 3693.828 kb on - strand, within Shewana3_3080at 3694.095 kb on - strand, within Shewana3_3080at 3694.139 kb on + strand, within Shewana3_3080at 3694.149 kb on + strand, within Shewana3_3080at 3694.195 kb on + strand, within Shewana3_3080at 3694.214 kb on - strand, within Shewana3_3080at 3694.245 kb on - strandat 3694.785 kb on - strandat 3695.216 kb on - strand, within Shewana3_3082

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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3,693,224 + Shewana3_3079 0.35 -2.1
3,693,277 + Shewana3_3079 0.42 +0.7
3,693,368 + Shewana3_3079 0.53 +1.0
3,693,399 - Shewana3_3079 0.57 -0.0
3,693,496 - Shewana3_3079 0.69 -1.4
3,693,512 + Shewana3_3079 0.71 -0.3
3,693,606 - Shewana3_3079 0.83 +0.4
3,693,617 - Shewana3_3079 0.84 +0.3
3,693,627 + Shewana3_3079 0.86 +0.1
3,693,630 - Shewana3_3079 0.86 -0.2
3,693,783 + -1.8
3,693,828 - Shewana3_3080 0.13 -1.8
3,694,095 - Shewana3_3080 0.66 -4.4
3,694,139 + Shewana3_3080 0.74 -2.1
3,694,149 + Shewana3_3080 0.76 -3.5
3,694,195 + Shewana3_3080 0.85 -3.1
3,694,214 - Shewana3_3080 0.89 -3.9
3,694,245 - -3.3
3,694,785 - +0.6
3,695,216 - Shewana3_3082 0.47 -0.9

Or see this region's nucleotide sequence