Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3071 and Shewana3_3072 are separated by 86 nucleotides Shewana3_3072 and Shewana3_3073 are separated by 470 nucleotides Shewana3_3073 and Shewana3_3074 are separated by 63 nucleotides
Shewana3_3071: Shewana3_3071 - glutamate-1-semialdehyde aminotransferase (RefSeq), at 3,683,258 to 3,684,550
_3071
Shewana3_3072: Shewana3_3072 - hypothetical protein (RefSeq), at 3,684,637 to 3,684,834
_3072
Shewana3_3073: Shewana3_3073 - citrate transporter (RefSeq), at 3,685,305 to 3,686,615
_3073
Shewana3_3074: Shewana3_3074 - general secretion pathway protein B (RefSeq), at 3,686,679 to 3,687,779
_3074
Position (kb)
3685
3686
3687 Strain fitness (log2 ratio)
-2
-1
0
1 at 3684.557 kb on + strand at 3684.732 kb on + strand, within Shewana3_3072 at 3685.280 kb on - strand at 3685.501 kb on - strand, within Shewana3_3073 at 3686.223 kb on + strand, within Shewana3_3073 at 3686.347 kb on + strand, within Shewana3_3073 at 3686.387 kb on + strand, within Shewana3_3073 at 3686.395 kb on - strand, within Shewana3_3073 at 3686.395 kb on - strand, within Shewana3_3073 at 3687.099 kb on - strand, within Shewana3_3074 at 3687.187 kb on - strand, within Shewana3_3074 at 3687.316 kb on + strand, within Shewana3_3074 at 3687.612 kb on - strand, within Shewana3_3074
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 3,684,557 + +0.2 3,684,732 + Shewana3_3072 0.48 +0.9 3,685,280 - +0.3 3,685,501 - Shewana3_3073 0.15 -0.3 3,686,223 + Shewana3_3073 0.70 -1.0 3,686,347 + Shewana3_3073 0.79 +0.3 3,686,387 + Shewana3_3073 0.83 -1.9 3,686,395 - Shewana3_3073 0.83 +0.7 3,686,395 - Shewana3_3073 0.83 +0.3 3,687,099 - Shewana3_3074 0.38 -0.1 3,687,187 - Shewana3_3074 0.46 +0.7 3,687,316 + Shewana3_3074 0.58 -0.6 3,687,612 - Shewana3_3074 0.85 -0.1
Or see this region's nucleotide sequence