Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3070

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3069 and Shewana3_3070 are separated by 191 nucleotidesShewana3_3070 and Shewana3_3071 are separated by 27 nucleotides Shewana3_3069: Shewana3_3069 - Cl- channel, voltage-gated family protein (RefSeq), at 3,680,295 to 3,682,019 _3069 Shewana3_3070: Shewana3_3070 - aspartate carbamoyltransferase (RefSeq), at 3,682,211 to 3,683,230 _3070 Shewana3_3071: Shewana3_3071 - glutamate-1-semialdehyde aminotransferase (RefSeq), at 3,683,258 to 3,684,550 _3071 Position (kb) 3682 3683 3684Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 3681.396 kb on + strand, within Shewana3_3069at 3681.404 kb on - strand, within Shewana3_3069at 3681.776 kb on - strand, within Shewana3_3069at 3681.776 kb on - strand, within Shewana3_3069at 3681.883 kb on - strandat 3681.969 kb on + strandat 3682.034 kb on + strandat 3682.126 kb on - strandat 3682.145 kb on + strandat 3682.242 kb on + strandat 3682.334 kb on - strand, within Shewana3_3070at 3682.379 kb on + strand, within Shewana3_3070at 3682.394 kb on + strand, within Shewana3_3070at 3682.576 kb on - strand, within Shewana3_3070at 3682.658 kb on + strand, within Shewana3_3070at 3682.809 kb on + strand, within Shewana3_3070at 3683.020 kb on + strand, within Shewana3_3070at 3683.063 kb on + strand, within Shewana3_3070

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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3,681,396 + Shewana3_3069 0.64 -0.7
3,681,404 - Shewana3_3069 0.64 +0.7
3,681,776 - Shewana3_3069 0.86 +0.2
3,681,776 - Shewana3_3069 0.86 -0.7
3,681,883 - +0.7
3,681,969 + -0.2
3,682,034 + +0.2
3,682,126 - -0.4
3,682,145 + -1.9
3,682,242 + -2.5
3,682,334 - Shewana3_3070 0.12 -3.1
3,682,379 + Shewana3_3070 0.16 -3.4
3,682,394 + Shewana3_3070 0.18 -5.8
3,682,576 - Shewana3_3070 0.36 -4.7
3,682,658 + Shewana3_3070 0.44 -2.3
3,682,809 + Shewana3_3070 0.59 -4.6
3,683,020 + Shewana3_3070 0.79 -3.3
3,683,063 + Shewana3_3070 0.84 -1.9

Or see this region's nucleotide sequence