Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3027 and Shewana3_3028 are separated by 179 nucleotides Shewana3_3028 and Shewana3_3029 are separated by 167 nucleotides Shewana3_3029 and Shewana3_3030 are separated by 11 nucleotides
Shewana3_3027: Shewana3_3027 - signal peptidase I (RefSeq), at 3,632,110 to 3,633,027
_3027
Shewana3_3028: Shewana3_3028 - GTP-binding protein LepA (RefSeq), at 3,633,207 to 3,634,997
_3028
Shewana3_3029: Shewana3_3029 - positive regulator of sigma(E), RseC/MucC (RefSeq), at 3,635,165 to 3,635,638
_3029
Shewana3_3030: Shewana3_3030 - sigma E regulatory protein, MucB/RseB (RefSeq), at 3,635,650 to 3,636,582
_3030
Position (kb)
3633
3634
3635 Strain fitness (log2 ratio)
-2
-1
0
1 at 3633.342 kb on - strand at 3633.496 kb on - strand, within Shewana3_3028 at 3634.001 kb on - strand, within Shewana3_3028 at 3634.001 kb on - strand, within Shewana3_3028 at 3634.056 kb on - strand, within Shewana3_3028 at 3634.533 kb on - strand, within Shewana3_3028 at 3634.638 kb on - strand, within Shewana3_3028 at 3635.910 kb on - strand, within Shewana3_3030
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 3,633,342 - -0.3 3,633,496 - Shewana3_3028 0.16 -1.3 3,634,001 - Shewana3_3028 0.44 -1.3 3,634,001 - Shewana3_3028 0.44 -2.5 3,634,056 - Shewana3_3028 0.47 -1.5 3,634,533 - Shewana3_3028 0.74 -1.4 3,634,638 - Shewana3_3028 0.80 -1.6 3,635,910 - Shewana3_3030 0.28 +0.6
Or see this region's nucleotide sequence