Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2335

Experiment: NAG (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2333 and Shewana3_2334 are separated by 96 nucleotidesShewana3_2334 and Shewana3_2335 are separated by 78 nucleotidesShewana3_2335 and Shewana3_2336 overlap by 8 nucleotidesShewana3_2336 and Shewana3_2337 are separated by 95 nucleotides Shewana3_2333: Shewana3_2333 - permease (RefSeq), at 2,808,718 to 2,809,716 _2333 Shewana3_2334: Shewana3_2334 - protein tyrosine phosphatase (RefSeq), at 2,809,813 to 2,810,319 _2334 Shewana3_2335: Shewana3_2335 - ArsR family transcriptional regulator (RefSeq), at 2,810,398 to 2,810,745 _2335 Shewana3_2336: Shewana3_2336 - protein tyrosine phosphatase (RefSeq), at 2,810,738 to 2,811,154 _2336 Shewana3_2337: Shewana3_2337 - ArsR family transcriptional regulator (RefSeq), at 2,811,250 to 2,811,537 _2337 Position (kb) 2810 2811Strain fitness (log2 ratio) -2 -1 0 1at 2809.454 kb on - strand, within Shewana3_2333at 2809.792 kb on + strandat 2809.792 kb on + strandat 2809.800 kb on - strandat 2809.891 kb on + strandat 2810.003 kb on - strand, within Shewana3_2334at 2810.161 kb on + strand, within Shewana3_2334at 2810.180 kb on - strand, within Shewana3_2334at 2810.667 kb on - strand, within Shewana3_2335at 2810.743 kb on - strandat 2810.804 kb on + strand, within Shewana3_2336at 2810.855 kb on - strand, within Shewana3_2336at 2811.036 kb on + strandat 2811.244 kb on - strandat 2811.417 kb on - strand, within Shewana3_2337at 2811.485 kb on - strand, within Shewana3_2337at 2811.629 kb on + strandat 2811.656 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
remove
2,809,454 - Shewana3_2333 0.74 +0.9
2,809,792 + +0.5
2,809,792 + +0.8
2,809,800 - -0.5
2,809,891 + +0.5
2,810,003 - Shewana3_2334 0.37 +0.5
2,810,161 + Shewana3_2334 0.69 -0.1
2,810,180 - Shewana3_2334 0.72 -0.2
2,810,667 - Shewana3_2335 0.77 +0.9
2,810,743 - +0.3
2,810,804 + Shewana3_2336 0.16 -1.9
2,810,855 - Shewana3_2336 0.28 -0.5
2,811,036 + -0.1
2,811,244 - +0.2
2,811,417 - Shewana3_2337 0.58 -1.0
2,811,485 - Shewana3_2337 0.82 -0.9
2,811,629 + -0.5
2,811,656 - +0.1

Or see this region's nucleotide sequence