Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2153

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2152 and Shewana3_2153 are separated by 185 nucleotidesShewana3_2153 and Shewana3_2154 are separated by 140 nucleotides Shewana3_2152: Shewana3_2152 - DNA-binding transcriptional regulator HexR (RefSeq), at 2,578,283 to 2,579,137 _2152 Shewana3_2153: Shewana3_2153 - pyruvate kinase (RefSeq), at 2,579,323 to 2,580,762 _2153 Shewana3_2154: Shewana3_2154 - acyl-CoA dehydrogenase (RefSeq), at 2,580,903 to 2,583,182 _2154 Position (kb) 2579 2580 2581Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2578.341 kb on + strandat 2578.382 kb on - strand, within Shewana3_2152at 2578.566 kb on - strandat 2578.617 kb on + strand, within Shewana3_2152at 2578.625 kb on - strand, within Shewana3_2152at 2578.945 kb on + strand, within Shewana3_2152at 2579.039 kb on + strand, within Shewana3_2152at 2579.180 kb on - strandat 2579.611 kb on + strand, within Shewana3_2153at 2579.767 kb on - strand, within Shewana3_2153at 2580.109 kb on + strand, within Shewana3_2153at 2580.223 kb on + strand, within Shewana3_2153at 2580.407 kb on + strand, within Shewana3_2153at 2580.735 kb on + strandat 2580.950 kb on - strandat 2580.998 kb on + strandat 2581.374 kb on - strand, within Shewana3_2154

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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2,578,341 + +0.5
2,578,382 - Shewana3_2152 0.12 -1.9
2,578,566 - +0.7
2,578,617 + Shewana3_2152 0.39 -0.9
2,578,625 - Shewana3_2152 0.40 -0.9
2,578,945 + Shewana3_2152 0.77 -0.4
2,579,039 + Shewana3_2152 0.88 +0.8
2,579,180 - -1.2
2,579,611 + Shewana3_2153 0.20 -2.6
2,579,767 - Shewana3_2153 0.31 -1.2
2,580,109 + Shewana3_2153 0.55 -4.4
2,580,223 + Shewana3_2153 0.62 -4.1
2,580,407 + Shewana3_2153 0.75 -1.6
2,580,735 + -2.2
2,580,950 - +1.0
2,580,998 + -1.5
2,581,374 - Shewana3_2154 0.21 +0.1

Or see this region's nucleotide sequence