Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0577 and Shewana3_0578 are separated by 40 nucleotides Shewana3_0578 and Shewana3_0579 are separated by 247 nucleotides Shewana3_0579 and Shewana3_0580 are separated by 107 nucleotides
Shewana3_0577: Shewana3_0577 - hypothetical protein (RefSeq), at 675,647 to 678,049
_0577
Shewana3_0578: Shewana3_0578 - serine/threonine protein kinase (RefSeq), at 678,090 to 679,898
_0578
Shewana3_0579: Shewana3_0579 - hypothetical protein (RefSeq), at 680,146 to 680,484
_0579
Shewana3_0580: Shewana3_0580 - thiopurine S-methyltransferase (RefSeq), at 680,592 to 681,248
_0580
Position (kb) 678
679
680 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 677.237 kb on + strand, within Shewana3_0577 at 677.298 kb on - strand, within Shewana3_0577 at 677.325 kb on + strand, within Shewana3_0577 at 677.434 kb on - strand, within Shewana3_0577 at 677.590 kb on - strand, within Shewana3_0577 at 677.631 kb on + strand, within Shewana3_0577 at 677.640 kb on - strand, within Shewana3_0577 at 677.770 kb on - strand, within Shewana3_0577 at 677.776 kb on + strand, within Shewana3_0577 at 677.776 kb on + strand, within Shewana3_0577 at 677.784 kb on - strand, within Shewana3_0577 at 677.860 kb on + strand at 677.905 kb on + strand at 677.913 kb on - strand at 677.958 kb on - strand at 677.976 kb on + strand at 677.984 kb on - strand at 678.017 kb on - strand at 678.017 kb on - strand at 678.133 kb on + strand at 678.361 kb on - strand, within Shewana3_0578 at 678.476 kb on + strand, within Shewana3_0578 at 678.484 kb on - strand, within Shewana3_0578 at 678.488 kb on + strand, within Shewana3_0578 at 678.579 kb on - strand, within Shewana3_0578 at 678.733 kb on - strand, within Shewana3_0578 at 678.768 kb on - strand, within Shewana3_0578 at 678.892 kb on - strand, within Shewana3_0578 at 678.926 kb on - strand, within Shewana3_0578 at 679.053 kb on - strand, within Shewana3_0578 at 679.096 kb on - strand, within Shewana3_0578 at 679.118 kb on - strand, within Shewana3_0578 at 679.151 kb on - strand, within Shewana3_0578 at 679.278 kb on - strand, within Shewana3_0578 at 679.419 kb on + strand, within Shewana3_0578 at 679.421 kb on + strand, within Shewana3_0578 at 679.427 kb on - strand, within Shewana3_0578 at 679.448 kb on - strand, within Shewana3_0578 at 679.597 kb on + strand, within Shewana3_0578 at 679.597 kb on + strand, within Shewana3_0578 at 679.599 kb on + strand, within Shewana3_0578 at 679.607 kb on - strand, within Shewana3_0578 at 679.612 kb on + strand, within Shewana3_0578 at 680.138 kb on - strand at 680.268 kb on + strand, within Shewana3_0579 at 680.280 kb on + strand, within Shewana3_0579 at 680.473 kb on + strand at 680.481 kb on - strand at 680.502 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 677,237 + Shewana3_0577 0.66 +0.2 677,298 - Shewana3_0577 0.69 -0.4 677,325 + Shewana3_0577 0.70 +0.4 677,434 - Shewana3_0577 0.74 +0.4 677,590 - Shewana3_0577 0.81 -1.4 677,631 + Shewana3_0577 0.83 +0.5 677,640 - Shewana3_0577 0.83 +0.1 677,770 - Shewana3_0577 0.88 +0.6 677,776 + Shewana3_0577 0.89 -0.8 677,776 + Shewana3_0577 0.89 +0.3 677,784 - Shewana3_0577 0.89 -0.3 677,860 + +0.4 677,905 + +0.4 677,913 - +1.2 677,958 - -1.7 677,976 + +0.5 677,984 - -0.8 678,017 - +0.1 678,017 - +0.5 678,133 + -3.1 678,361 - Shewana3_0578 0.15 -0.1 678,476 + Shewana3_0578 0.21 -0.5 678,484 - Shewana3_0578 0.22 -0.8 678,488 + Shewana3_0578 0.22 -1.3 678,579 - Shewana3_0578 0.27 -1.1 678,733 - Shewana3_0578 0.36 +0.3 678,768 - Shewana3_0578 0.37 -0.5 678,892 - Shewana3_0578 0.44 -0.7 678,926 - Shewana3_0578 0.46 -1.1 679,053 - Shewana3_0578 0.53 -1.8 679,096 - Shewana3_0578 0.56 -2.4 679,118 - Shewana3_0578 0.57 -1.8 679,151 - Shewana3_0578 0.59 -1.2 679,278 - Shewana3_0578 0.66 -0.5 679,419 + Shewana3_0578 0.73 -2.0 679,421 + Shewana3_0578 0.74 -1.1 679,427 - Shewana3_0578 0.74 -0.9 679,448 - Shewana3_0578 0.75 -0.3 679,597 + Shewana3_0578 0.83 -0.3 679,597 + Shewana3_0578 0.83 -3.4 679,599 + Shewana3_0578 0.83 -0.2 679,607 - Shewana3_0578 0.84 -1.8 679,612 + Shewana3_0578 0.84 -1.7 680,138 - -1.7 680,268 + Shewana3_0579 0.36 +0.2 680,280 + Shewana3_0579 0.40 +0.9 680,473 + +0.1 680,481 - +0.6 680,502 - -0.1
Or see this region's nucleotide sequence