Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0226 and Shewana3_0227 are separated by 114 nucleotides Shewana3_0227 and Shewana3_0228 overlap by 4 nucleotides Shewana3_0228 and Shewana3_0229 overlap by 1 nucleotides Shewana3_0229 and Shewana3_0230 are separated by 1 nucleotides
Shewana3_0226: Shewana3_0226 - hypothetical protein (RefSeq), at 256,982 to 257,986
_0226
Shewana3_0227: Shewana3_0227 - cytochrome c-type biogenesis protein CcmE (RefSeq), at 258,101 to 258,586
_0227
Shewana3_0228: Shewana3_0228 - Heme exporter protein D (CcmD) (RefSeq), at 258,583 to 258,783
_0228
Shewana3_0229: Shewana3_0229 - heme exporter protein CcmC (RefSeq), at 258,783 to 259,529
_0229
Shewana3_0230: Shewana3_0230 - heme exporter protein CcmB (RefSeq), at 259,531 to 260,217
_0230
Position (kb) 258
259 Strain fitness (log2 ratio) -2
-1
0
1
2 at 257.337 kb on + strand, within Shewana3_0226 at 257.362 kb on + strand, within Shewana3_0226 at 257.485 kb on - strand, within Shewana3_0226 at 257.757 kb on + strand, within Shewana3_0226 at 257.904 kb on + strand at 257.990 kb on - strand at 258.015 kb on + strand at 258.020 kb on + strand at 258.373 kb on + strand, within Shewana3_0227 at 258.381 kb on - strand, within Shewana3_0227 at 258.381 kb on - strand, within Shewana3_0227 at 258.444 kb on + strand, within Shewana3_0227 at 258.654 kb on - strand, within Shewana3_0228 at 258.737 kb on - strand, within Shewana3_0228 at 258.807 kb on - strand at 259.003 kb on - strand, within Shewana3_0229 at 259.198 kb on + strand, within Shewana3_0229 at 259.512 kb on - strand at 259.572 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 257,337 + Shewana3_0226 0.35 +0.9 257,362 + Shewana3_0226 0.38 -0.5 257,485 - Shewana3_0226 0.50 -0.1 257,757 + Shewana3_0226 0.77 +0.5 257,904 + -0.2 257,990 - -0.6 258,015 + +0.3 258,020 + -1.1 258,373 + Shewana3_0227 0.56 -0.8 258,381 - Shewana3_0227 0.58 -2.0 258,381 - Shewana3_0227 0.58 -2.2 258,444 + Shewana3_0227 0.71 -1.4 258,654 - Shewana3_0228 0.35 +2.1 258,737 - Shewana3_0228 0.77 +0.7 258,807 - -1.7 259,003 - Shewana3_0229 0.29 +1.1 259,198 + Shewana3_0229 0.56 -2.2 259,512 - -0.9 259,572 + -1.0
Or see this region's nucleotide sequence