Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0135 and Shewana3_0136 are separated by 22 nucleotides Shewana3_0136 and Shewana3_0137 are separated by 318 nucleotides
Shewana3_0135: Shewana3_0135 - oligopeptidase B (RefSeq), at 153,400 to 155,535
_0135
Shewana3_0136: Shewana3_0136 - excinuclease ABC subunit C (RefSeq), at 155,558 to 155,980
_0136
Shewana3_0137: Shewana3_0137 - hypothetical protein (RefSeq), at 156,299 to 157,129
_0137
Position (kb) 155
156 Strain fitness (log2 ratio) -2
-1
0
1 at 154.617 kb on - strand, within Shewana3_0135 at 154.617 kb on - strand, within Shewana3_0135 at 154.759 kb on - strand, within Shewana3_0135 at 154.898 kb on + strand, within Shewana3_0135 at 155.017 kb on + strand, within Shewana3_0135 at 155.025 kb on - strand, within Shewana3_0135 at 155.031 kb on + strand, within Shewana3_0135 at 155.158 kb on - strand, within Shewana3_0135 at 155.251 kb on + strand, within Shewana3_0135 at 155.350 kb on - strand at 155.507 kb on + strand at 155.515 kb on - strand at 155.761 kb on + strand, within Shewana3_0136 at 155.761 kb on + strand, within Shewana3_0136 at 155.769 kb on - strand, within Shewana3_0136 at 155.769 kb on - strand, within Shewana3_0136 at 155.796 kb on + strand, within Shewana3_0136 at 155.829 kb on - strand, within Shewana3_0136 at 155.908 kb on - strand, within Shewana3_0136 at 156.069 kb on + strand at 156.126 kb on - strand at 156.316 kb on - strand at 156.600 kb on + strand, within Shewana3_0137 at 156.600 kb on + strand, within Shewana3_0137 at 156.618 kb on + strand, within Shewana3_0137 at 156.618 kb on + strand, within Shewana3_0137 at 156.633 kb on - strand, within Shewana3_0137 at 156.744 kb on + strand, within Shewana3_0137 at 156.761 kb on - strand, within Shewana3_0137 at 156.851 kb on - strand, within Shewana3_0137 at 156.969 kb on - strand, within Shewana3_0137
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 154,617 - Shewana3_0135 0.57 -0.1 154,617 - Shewana3_0135 0.57 +0.8 154,759 - Shewana3_0135 0.64 -0.8 154,898 + Shewana3_0135 0.70 +0.1 155,017 + Shewana3_0135 0.76 +1.2 155,025 - Shewana3_0135 0.76 +0.6 155,031 + Shewana3_0135 0.76 +0.6 155,158 - Shewana3_0135 0.82 -0.2 155,251 + Shewana3_0135 0.87 -0.2 155,350 - -1.1 155,507 + +0.2 155,515 - -0.3 155,761 + Shewana3_0136 0.48 +0.9 155,761 + Shewana3_0136 0.48 +1.3 155,769 - Shewana3_0136 0.50 +0.4 155,769 - Shewana3_0136 0.50 +0.0 155,796 + Shewana3_0136 0.56 -2.1 155,829 - Shewana3_0136 0.64 +0.1 155,908 - Shewana3_0136 0.83 +0.8 156,069 + -0.6 156,126 - +0.6 156,316 - +0.1 156,600 + Shewana3_0137 0.36 -0.2 156,600 + Shewana3_0137 0.36 -0.8 156,618 + Shewana3_0137 0.38 -0.6 156,618 + Shewana3_0137 0.38 +0.2 156,633 - Shewana3_0137 0.40 -0.1 156,744 + Shewana3_0137 0.54 -0.8 156,761 - Shewana3_0137 0.56 +0.5 156,851 - Shewana3_0137 0.66 -0.5 156,969 - Shewana3_0137 0.81 +0.0
Or see this region's nucleotide sequence