Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3109 and Shew_3110 are separated by 344 nucleotides Shew_3110 and Shew_3111 are separated by 111 nucleotides
Shew_3109: Shew_3109 - hypothetical protein (RefSeq), at 3,690,445 to 3,691,314
_3109
Shew_3110: Shew_3110 - hypothetical protein (RefSeq), at 3,691,659 to 3,691,868
_3110
Shew_3111: Shew_3111 - NAD-dependent epimerase/dehydratase (RefSeq), at 3,691,980 to 3,692,801
_3111
Position (kb)
3691
3692 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3690.675 kb on - strand, within Shew_3109 at 3690.718 kb on - strand, within Shew_3109 at 3690.751 kb on + strand, within Shew_3109 at 3690.942 kb on - strand, within Shew_3109 at 3691.093 kb on + strand, within Shew_3109 at 3691.101 kb on - strand, within Shew_3109 at 3691.267 kb on - strand at 3691.441 kb on - strand at 3691.480 kb on + strand at 3691.481 kb on + strand at 3691.481 kb on + strand at 3691.481 kb on + strand at 3691.481 kb on + strand at 3691.489 kb on - strand at 3691.489 kb on - strand at 3691.489 kb on - strand at 3691.512 kb on + strand at 3691.611 kb on - strand at 3691.627 kb on + strand at 3691.627 kb on + strand at 3691.627 kb on + strand at 3691.627 kb on + strand at 3691.635 kb on - strand at 3691.685 kb on + strand, within Shew_3110 at 3691.693 kb on - strand, within Shew_3110 at 3691.693 kb on - strand, within Shew_3110 at 3691.693 kb on - strand, within Shew_3110 at 3691.693 kb on - strand, within Shew_3110 at 3691.785 kb on - strand, within Shew_3110 at 3691.831 kb on + strand, within Shew_3110 at 3691.842 kb on + strand, within Shew_3110 at 3691.857 kb on + strand at 3691.872 kb on + strand at 3691.872 kb on + strand at 3691.872 kb on + strand at 3691.872 kb on + strand at 3691.880 kb on - strand at 3691.880 kb on - strand at 3691.943 kb on - strand at 3691.951 kb on - strand at 3692.039 kb on - strand at 3692.095 kb on - strand, within Shew_3111 at 3692.145 kb on + strand, within Shew_3111 at 3692.153 kb on - strand, within Shew_3111 at 3692.387 kb on - strand, within Shew_3111 at 3692.387 kb on - strand, within Shew_3111 at 3692.437 kb on + strand, within Shew_3111 at 3692.437 kb on + strand, within Shew_3111 at 3692.437 kb on + strand, within Shew_3111 at 3692.437 kb on + strand, within Shew_3111 at 3692.445 kb on - strand, within Shew_3111 at 3692.445 kb on - strand, within Shew_3111 at 3692.445 kb on - strand, within Shew_3111 at 3692.445 kb on - strand, within Shew_3111 at 3692.656 kb on - strand, within Shew_3111
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 3,690,675 - Shew_3109 0.26 +0.4 3,690,718 - Shew_3109 0.31 -0.4 3,690,751 + Shew_3109 0.35 -0.3 3,690,942 - Shew_3109 0.57 -0.2 3,691,093 + Shew_3109 0.74 +0.7 3,691,101 - Shew_3109 0.75 +0.1 3,691,267 - -0.1 3,691,441 - +0.3 3,691,480 + +0.5 3,691,481 + +2.3 3,691,481 + -1.6 3,691,481 + +0.7 3,691,481 + +1.4 3,691,489 - +1.6 3,691,489 - -0.3 3,691,489 - +2.0 3,691,512 + -0.2 3,691,611 - -0.9 3,691,627 + +0.9 3,691,627 + +0.2 3,691,627 + +0.3 3,691,627 + -1.0 3,691,635 - +0.1 3,691,685 + Shew_3110 0.12 -0.2 3,691,693 - Shew_3110 0.16 +0.1 3,691,693 - Shew_3110 0.16 +1.5 3,691,693 - Shew_3110 0.16 +0.9 3,691,693 - Shew_3110 0.16 +0.4 3,691,785 - Shew_3110 0.60 -0.1 3,691,831 + Shew_3110 0.82 +2.2 3,691,842 + Shew_3110 0.87 -0.3 3,691,857 + +0.7 3,691,872 + -0.9 3,691,872 + -0.2 3,691,872 + -0.1 3,691,872 + -0.5 3,691,880 - -0.5 3,691,880 - +0.1 3,691,943 - -0.4 3,691,951 - -1.2 3,692,039 - -2.5 3,692,095 - Shew_3111 0.14 -1.9 3,692,145 + Shew_3111 0.20 -0.9 3,692,153 - Shew_3111 0.21 +0.7 3,692,387 - Shew_3111 0.50 -0.1 3,692,387 - Shew_3111 0.50 -0.3 3,692,437 + Shew_3111 0.56 +0.6 3,692,437 + Shew_3111 0.56 +0.3 3,692,437 + Shew_3111 0.56 +1.2 3,692,437 + Shew_3111 0.56 +2.6 3,692,445 - Shew_3111 0.57 +0.8 3,692,445 - Shew_3111 0.57 +0.5 3,692,445 - Shew_3111 0.57 -0.2 3,692,445 - Shew_3111 0.57 -0.6 3,692,656 - Shew_3111 0.82 -0.3
Or see this region's nucleotide sequence