Strain Fitness in Shewanella loihica PV-4 around Shew_3108

Experiment: succinate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C)
3,688,323	-				+1.0
3,688,329	-				-0.0
3,688,375	+				+0.6
3,688,383	-				+0.6
3,688,383	-				+0.2
3,688,397	+				+2.9
3,688,478	-				+0.4
3,688,479	+				-0.7
3,688,479	+				+1.5
3,688,479	+				+1.4
3,688,479	+				+0.2
3,688,487	-				+0.7
3,688,487	-				+0.7
3,688,487	-				+0.2
3,688,487	-				+0.2
3,688,487	-				+0.3
3,688,487	-				+0.7
3,688,487	-				-0.7
3,688,487	+				-0.0
3,688,487	-				+0.5
3,688,487	+				+2.8
3,688,487	+				-2.1
3,688,495	-				-0.3
3,688,495	-				-1.6
3,688,495	-				+0.6
3,688,495	-				-2.1
3,688,495	-				-0.1
3,688,499	+				-0.9
3,688,499	+				+0.7
3,688,532	-				+0.0
3,688,534	+				-0.7
3,688,540	+				+0.6
3,688,542	+				+1.7
3,688,547	-				-0.2
3,688,547	-				-0.5
3,688,547	+				-0.9
3,688,547	-				-1.3
3,688,555	-				+0.3
3,688,555	-				+0.6
3,688,559	+				-0.4
3,688,566	-				+0.6
3,688,567	+				+3.1
3,688,593	+				+1.2
3,688,594	+				-0.1
3,688,599	-				+0.3
3,688,601	+				+0.1
3,688,602	-				+0.1
3,688,609	-				-0.8
3,688,669	+				-0.2
3,688,677	-				-0.1
3,688,738	+				+1.7
3,688,746	-				-0.1
3,688,774	+				+0.1
3,688,782	-				+0.2
3,688,798	+				+0.6
3,688,849	-				+0.1
3,688,849	-				-2.5
3,688,849	-				+0.7
3,688,854	-				+0.9
3,688,872	+				+2.8
3,688,874	+				+2.5
3,688,874	+				+3.0
3,688,874	+				+1.1
3,688,874	+				+0.1
3,688,874	+				+0.3
3,688,875	+				-0.6
3,688,875	+				-0.5
3,688,880	-				+0.8
3,688,882	-				-1.2
3,688,882	-				-0.9
3,688,883	-				-0.5
3,688,883	-				+0.2
3,688,883	-				+0.5
3,688,883	-				+0.8
3,688,886	+				+1.3
3,688,917	+				-2.1
3,688,923	-				-0.4
3,688,924	-				+0.0
3,688,925	-				+1.6
3,688,931	-				+1.1
3,688,962	+				+0.6
3,688,972	-				+1.5
3,688,972	+				+0.9
3,688,972	+				+1.0
3,688,979	+				-1.6
3,688,980	-				+1.2
3,688,987	+				+1.5
3,689,006	+				-0.2
3,689,006	+				-0.0
3,689,006	+				-1.3
3,689,006	+				+2.3
3,689,006	+				+2.0
3,689,006	+				+0.2
3,689,006	+				+0.1
3,689,006	+				+2.2
3,689,006	+				+0.7
3,689,006	+				+0.5
3,689,006	+				+0.7
3,689,006	+				-1.0
3,689,006	+				-0.3
3,689,006	+				+1.6
3,689,006	+				+1.9
3,689,006	+				+1.6
3,689,006	+				+1.0
3,689,006	+				+1.7
3,689,006	+				+1.3
3,689,006	+				+0.6
3,689,006	+				+1.7
3,689,006	+				+0.1
3,689,006	+				-0.5
3,689,006	+				+2.1
3,689,012	+				+1.4
3,689,012	+				+0.1
3,689,012	+				+2.3
3,689,014	-				-1.6
3,689,014	-				+0.5
3,689,014	-				-0.3
3,689,014	-				-0.3
3,689,014	-				-0.9
3,689,014	-				-0.3
3,689,014	-				+0.9
3,689,014	-				+0.4
3,689,014	-				+1.7
3,689,014	-				+0.4
3,689,014	-				-0.8
3,689,014	-				-0.3
3,689,014	-				-0.6
3,689,014	-				-1.3
3,689,014	-				+0.5
3,689,014	-				-0.5
3,689,014	-				+2.0
3,689,014	-				+0.7
3,689,014	-				+0.3
3,689,014	-				+1.3
3,689,014	-				-0.0
3,689,014	-				+0.3
3,689,014	-				+1.1
3,689,014	-				+0.1
3,689,014	-				-1.6
3,689,014	-				+0.1
3,689,014	-				-0.9
3,689,014	-				-0.7
3,689,014	-				+0.2
3,689,014	-				+0.7
3,689,014	-				-0.3
3,689,014	-				-0.9
3,689,014	-				+0.7
3,689,014	-				+0.1
3,689,014	-				+1.0
3,689,014	-				+0.2
3,689,014	-				-0.3
3,689,014	-				-0.2
3,689,014	-				-2.4
3,689,014	-				+0.1
3,689,020	-				+1.4
3,689,020	+				+1.4
3,689,020	+				-1.6
3,689,020	+				-1.3
3,689,020	+				-0.5
3,689,020	+				-0.3
3,689,020	+				+0.3
3,689,020	+				+1.5
3,689,020	+				-0.7
3,689,020	-				-0.2
3,689,020	+				+0.6
3,689,020	-				+1.2
3,689,026	-				+0.4
3,689,027	-				-0.0
3,689,027	-				+1.1
3,689,028	-				+0.1
3,689,028	-				+0.2
3,689,051	-				-0.0
3,689,060	-				-0.9
3,689,090	+				+1.2
3,689,099	-				-0.2
3,689,099	-				+0.0
3,689,099	-				-0.5
3,689,101	+				-0.0
3,689,101	+				+0.7
3,689,109	-				+0.4
3,689,130	-				+1.0
3,689,178	+				+0.6
3,689,178	+				+2.4
3,689,186	-				+1.1
3,689,200	+				+3.5
3,689,208	-				-1.7
3,689,238	+				+1.0
3,689,238	+				+0.7
3,689,238	+				+2.3
3,689,238	+				-0.3
3,689,238	+				+1.8
3,689,238	+				+0.7
3,689,238	+				-0.3
3,689,242	-				-2.1
3,689,246	-				-0.5
3,689,246	-				-1.9
3,689,246	-				+0.6
3,689,246	-				+0.7
3,689,246	-				-1.4
3,689,246	-				-0.7
3,689,246	-				+0.4
3,689,246	-				+0.1
3,689,246	-				-2.1
3,689,269	-				-0.3
3,689,350	-				-1.5
3,689,356	+				+2.5
3,689,364	-				+0.4
3,689,431	-		Shew_3108	0.20	+0.9
3,689,431	-		Shew_3108	0.20	+1.3
3,689,571	+		Shew_3108	0.45	-0.3
3,689,578	-		Shew_3108	0.47	+0.4
3,689,579	-		Shew_3108	0.47	+1.2
3,689,579	-		Shew_3108	0.47	+1.7
3,689,596	+		Shew_3108	0.50	+0.9
3,689,596	+		Shew_3108	0.50	-0.1
3,689,599	-		Shew_3108	0.50	-1.0
3,689,625	+		Shew_3108	0.55	+0.6
3,689,638	+		Shew_3108	0.57	-1.4
3,689,658	+		Shew_3108	0.61	+0.2
3,689,658	+		Shew_3108	0.61	+0.1
3,689,666	+		Shew_3108	0.62	+0.2
3,689,667	-		Shew_3108	0.63	+0.2
3,689,681	+		Shew_3108	0.65	-0.4
3,689,686	-		Shew_3108	0.66	+0.9
3,689,695	+		Shew_3108	0.68	+0.0
3,689,701	+		Shew_3108	0.69	+2.0
3,689,706	+		Shew_3108	0.70	+1.0
3,689,706	+		Shew_3108	0.70	+0.3
3,689,706	+		Shew_3108	0.70	+0.6
3,689,706	+		Shew_3108	0.70	-1.3
3,689,709	-		Shew_3108	0.70	+0.0
3,689,714	-		Shew_3108	0.71	-1.1
3,689,714	-		Shew_3108	0.71	-0.1
3,689,714	-		Shew_3108	0.71	+0.8
3,689,746	-		Shew_3108	0.77	+1.2
3,689,746	-		Shew_3108	0.77	+0.6
3,689,756	-		Shew_3108	0.78	+0.7
3,689,758	+		Shew_3108	0.79	+0.4
3,689,758	+		Shew_3108	0.79	-0.4
3,689,758	+		Shew_3108	0.79	+1.1
3,689,758	+		Shew_3108	0.79	+0.9
3,689,758	+		Shew_3108	0.79	+0.6
3,689,758	+		Shew_3108	0.79	+0.4
3,689,758	+		Shew_3108	0.79	+0.2
3,689,758	+		Shew_3108	0.79	-1.3
3,689,758	+		Shew_3108	0.79	+0.5
3,689,758	+		Shew_3108	0.79	+0.1
3,689,758	+		Shew_3108	0.79	+0.3
3,689,758	+		Shew_3108	0.79	+0.2
3,689,758	+		Shew_3108	0.79	+2.1
3,689,758	+		Shew_3108	0.79	+0.7
3,689,758	+		Shew_3108	0.79	+1.3
3,689,758	+		Shew_3108	0.79	+0.7
3,689,758	+		Shew_3108	0.79	-0.0
3,689,758	+		Shew_3108	0.79	-0.0
3,689,758	+		Shew_3108	0.79	+0.3
3,689,758	+		Shew_3108	0.79	+1.0
3,689,758	+		Shew_3108	0.79	-0.6
3,689,758	+		Shew_3108	0.79	+1.3
3,689,758	+		Shew_3108	0.79	-1.5
3,689,758	+		Shew_3108	0.79	-1.3
3,689,758	+		Shew_3108	0.79	-0.9
3,689,758	+		Shew_3108	0.79	-1.9
3,689,758	+		Shew_3108	0.79	-2.1
3,689,758	+		Shew_3108	0.79	-0.2
3,689,758	+		Shew_3108	0.79	-0.3
3,689,758	+		Shew_3108	0.79	+2.0
3,689,758	+		Shew_3108	0.79	-0.2
3,689,758	+		Shew_3108	0.79	-1.6
3,689,758	+		Shew_3108	0.79	+0.5
3,689,758	+		Shew_3108	0.79	+0.3
3,689,758	+		Shew_3108	0.79	+0.7
3,689,758	+		Shew_3108	0.79	+0.3
3,689,758	+		Shew_3108	0.79	-0.0
3,689,758	+		Shew_3108	0.79	+1.2
3,689,758	+		Shew_3108	0.79	+0.4
3,689,758	+		Shew_3108	0.79	+0.3
3,689,758	+		Shew_3108	0.79	-0.4
3,689,758	+		Shew_3108	0.79	-0.9
3,689,758	+		Shew_3108	0.79	+0.5
3,689,758	+		Shew_3108	0.79	+0.4
3,689,758	+		Shew_3108	0.79	+0.5
3,689,758	+		Shew_3108	0.79	+0.2
3,689,758	+		Shew_3108	0.79	+0.1
3,689,758	+		Shew_3108	0.79	+0.7
3,689,758	+		Shew_3108	0.79	-0.7
3,689,758	+		Shew_3108	0.79	-0.9
3,689,758	+		Shew_3108	0.79	-2.4
3,689,758	+		Shew_3108	0.79	+1.5
3,689,758	+		Shew_3108	0.79	-0.5
3,689,758	+		Shew_3108	0.79	+0.7
3,689,766	-		Shew_3108	0.80	-1.1
3,689,766	-		Shew_3108	0.80	+1.4
3,689,766	-		Shew_3108	0.80	-0.9
3,689,766	-		Shew_3108	0.80	+0.7
3,689,766	-		Shew_3108	0.80	-0.1
3,689,766	-		Shew_3108	0.80	+0.1
3,689,766	-		Shew_3108	0.80	+0.2
3,689,766	-		Shew_3108	0.80	-0.5
3,689,766	-		Shew_3108	0.80	+0.6
3,689,766	-		Shew_3108	0.80	+0.6
3,689,766	-		Shew_3108	0.80	-0.3
3,689,766	-		Shew_3108	0.80	+0.6
3,689,766	-		Shew_3108	0.80	+0.3
3,689,766	-		Shew_3108	0.80	-0.1
3,689,766	-		Shew_3108	0.80	+0.2
3,689,766	-		Shew_3108	0.80	+3.6
3,689,766	-		Shew_3108	0.80	-0.2
3,689,766	-		Shew_3108	0.80	+0.3
3,689,766	-		Shew_3108	0.80	+0.1
3,689,766	-		Shew_3108	0.80	+0.9
3,689,766	-		Shew_3108	0.80	+1.2
3,689,766	-		Shew_3108	0.80	+1.0
3,689,766	-		Shew_3108	0.80	-0.0
3,689,766	-		Shew_3108	0.80	-0.2
3,689,766	-		Shew_3108	0.80	-1.5
3,689,766	-		Shew_3108	0.80	+0.8
3,689,766	-		Shew_3108	0.80	+0.7
3,689,766	-		Shew_3108	0.80	+1.5
3,689,766	-		Shew_3108	0.80	-0.1
3,689,766	-		Shew_3108	0.80	+0.4
3,689,766	-		Shew_3108	0.80	-2.1
3,689,766	-		Shew_3108	0.80	-0.5
3,689,766	-		Shew_3108	0.80	+1.2
3,689,766	-		Shew_3108	0.80	+1.7
3,689,766	-		Shew_3108	0.80	-0.9
3,689,766	-		Shew_3108	0.80	-1.5
3,689,766	-		Shew_3108	0.80	+1.4
3,689,766	-		Shew_3108	0.80	+0.6
3,689,766	-		Shew_3108	0.80	-2.0
3,689,766	-		Shew_3108	0.80	+1.1
3,689,766	-		Shew_3108	0.80	-1.4
3,689,766	-		Shew_3108	0.80	+0.5
3,689,766	-		Shew_3108	0.80	+0.9
3,689,766	-		Shew_3108	0.80	+0.2
3,689,787	+		Shew_3108	0.84	-0.5
3,689,795	+		Shew_3108	0.85	+0.5
3,689,795	+		Shew_3108	0.85	+3.8
3,689,795	+		Shew_3108	0.85	+0.7
3,689,795	+		Shew_3108	0.85	-0.0
3,689,795	+		Shew_3108	0.85	+0.4
3,689,795	+		Shew_3108	0.85	+0.6
3,689,795	+		Shew_3108	0.85	+0.7
3,689,795	+		Shew_3108	0.85	+0.9
3,689,795	+		Shew_3108	0.85	+0.9
3,689,795	+		Shew_3108	0.85	+0.3
3,689,795	+		Shew_3108	0.85	+0.1
3,689,795	+		Shew_3108	0.85	-2.3
3,689,795	+		Shew_3108	0.85	+0.5
3,689,795	+		Shew_3108	0.85	+0.6
3,689,797	+		Shew_3108	0.86	-0.0
3,689,803	-		Shew_3108	0.87	+0.8
3,689,803	-		Shew_3108	0.87	+0.1
3,689,803	+		Shew_3108	0.87	-1.0
3,689,803	-		Shew_3108	0.87	+0.1
3,689,803	-		Shew_3108	0.87	-0.2
3,689,803	-		Shew_3108	0.87	+0.6
3,689,803	-		Shew_3108	0.87	-0.3
3,689,803	-		Shew_3108	0.87	+0.0
3,689,803	-		Shew_3108	0.87	+1.1
3,689,803	-		Shew_3108	0.87	-0.5
3,689,803	-		Shew_3108	0.87	-0.9
3,689,803	-		Shew_3108	0.87	+0.2
3,689,803	-		Shew_3108	0.87	+1.1
3,689,813	-		Shew_3108	0.89	+0.7
3,689,874	+				+0.9
3,689,874	+				-0.5
3,689,889	+				+0.5
3,689,889	+				+0.5
3,689,892	+				+0.4
3,689,897	-				+0.3
3,689,897	-				+0.3
3,689,897	-				+0.4
3,689,899	+				-0.5
3,689,899	+				-1.9
3,689,899	+				+0.0
3,689,907	-				+1.3
3,689,907	-				-0.6
3,689,918	+				+1.0
3,689,925	-				-2.1
3,689,927	+				+2.4
3,689,927	+				+0.2
3,689,927	+				+0.4
3,689,927	+				+0.2
3,689,927	+				+0.4
3,689,933	+				+0.7
3,689,935	-				-0.1
3,689,935	-				-1.3
3,689,935	-				-0.7
3,690,033	-				+0.8
3,690,034	+				-0.8
3,690,047	+				-0.4
3,690,047	+				-1.1
3,690,055	+				+0.2
3,690,055	+				-1.0
3,690,063	-				+0.1
3,690,063	-				-0.5
3,690,063	-				+0.1
3,690,063	-				+0.3
3,690,078	-				-0.5
3,690,158	+				+1.1
3,690,178	-				-0.0
3,690,201	-				+0.3
3,690,280	-				+1.4
3,690,287	+				+0.0
3,690,362	+				-0.9
3,690,363	+				-0.1
3,690,571	-		Shew_3109	0.14	+1.3
3,690,598	+		Shew_3109	0.18	+0.2
3,690,647	-		Shew_3109	0.23	+0.3
3,690,675	-		Shew_3109	0.26	+0.4
3,690,718	-		Shew_3109	0.31	-0.4
3,690,751	+		Shew_3109	0.35	-0.3