Strain Fitness in Shewanella loihica PV-4 around Shew_2180

Experiment: succinate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C)
2,538,717	-				+0.8
2,538,769	+				+0.5
2,538,827	+				+1.1
2,538,880	+				+0.1
2,538,984	+		Shew_2179	0.20	+1.1
2,538,984	+		Shew_2179	0.20	+0.1
2,538,984	+		Shew_2179	0.20	-0.9
2,538,992	-		Shew_2179	0.21	-3.6
2,538,992	-		Shew_2179	0.21	-3.2
2,538,992	-		Shew_2179	0.21	-0.9
2,538,992	-		Shew_2179	0.21	-3.4
2,538,992	-		Shew_2179	0.21	-1.1
2,538,992	-		Shew_2179	0.21	-0.6
2,538,992	-		Shew_2179	0.21	-0.4
2,539,000	-		Shew_2179	0.22	-2.9
2,539,000	-		Shew_2179	0.22	-3.8
2,539,006	+		Shew_2179	0.22	+0.1
2,539,007	+		Shew_2179	0.23	-1.5
2,539,007	+		Shew_2179	0.23	-1.5
2,539,007	+		Shew_2179	0.23	-1.3
2,539,015	+		Shew_2179	0.23	-0.4
2,539,015	+		Shew_2179	0.23	+0.1
2,539,015	+		Shew_2179	0.23	+0.1
2,539,015	-		Shew_2179	0.23	-3.8
2,539,015	+		Shew_2179	0.23	-0.5
2,539,015	+		Shew_2179	0.23	-0.2
2,539,015	+		Shew_2179	0.23	+0.9
2,539,015	+		Shew_2179	0.23	-0.9
2,539,015	+		Shew_2179	0.23	-2.2
2,539,016	-		Shew_2179	0.24	-2.2
2,539,023	-		Shew_2179	0.24	+1.0
2,539,023	-		Shew_2179	0.24	+0.5
2,539,023	-		Shew_2179	0.24	-0.4
2,539,023	-		Shew_2179	0.24	+0.1
2,539,023	-		Shew_2179	0.24	+0.8
2,539,023	-		Shew_2179	0.24	-1.5
2,539,023	-		Shew_2179	0.24	-2.9
2,539,023	-		Shew_2179	0.24	+0.9
2,539,023	-		Shew_2179	0.24	+0.1
2,539,023	-		Shew_2179	0.24	+0.4
2,539,023	-		Shew_2179	0.24	-0.4
2,539,023	-		Shew_2179	0.24	-0.0
2,539,023	-		Shew_2179	0.24	+0.1
2,539,023	-		Shew_2179	0.24	+0.7
2,539,023	-		Shew_2179	0.24	+1.6
2,539,023	-		Shew_2179	0.24	+0.0
2,539,023	-		Shew_2179	0.24	+0.3
2,539,023	-		Shew_2179	0.24	+1.6
2,539,023	-		Shew_2179	0.24	+0.8
2,539,023	-		Shew_2179	0.24	-0.4
2,539,023	-		Shew_2179	0.24	-0.9
2,539,023	-		Shew_2179	0.24	+0.5
2,539,023	-		Shew_2179	0.24	+0.1
2,539,023	-		Shew_2179	0.24	+0.8
2,539,031	+		Shew_2179	0.25	-0.9
2,539,039	-		Shew_2179	0.26	+0.1
2,539,065	-		Shew_2179	0.29	-1.5
2,539,069	+		Shew_2179	0.29	-2.1
2,539,077	-		Shew_2179	0.30	+0.7
2,539,098	+		Shew_2179	0.32	-1.5
2,539,103	+		Shew_2179	0.33	-0.4
2,539,124	-		Shew_2179	0.35	-1.6
2,539,151	-		Shew_2179	0.38	-0.5
2,539,186	-		Shew_2179	0.42	-2.6
2,539,186	-		Shew_2179	0.42	-4.3
2,539,186	-		Shew_2179	0.42	-1.9
2,539,229	+		Shew_2179	0.47	-1.7
2,539,232	+		Shew_2179	0.47	-1.5
2,539,240	-		Shew_2179	0.48	-1.5
2,539,264	-		Shew_2179	0.51	-2.4
2,539,272	+		Shew_2179	0.51	+0.9
2,539,273	+		Shew_2179	0.52	-1.9
2,539,273	-		Shew_2179	0.52	-0.5
2,539,273	+		Shew_2179	0.52	-1.1
2,539,279	+		Shew_2179	0.52	-0.9
2,539,280	-		Shew_2179	0.52	-1.7
2,539,281	-		Shew_2179	0.52	+0.1
2,539,281	-		Shew_2179	0.52	-0.4
2,539,281	-		Shew_2179	0.52	+1.5
2,539,281	-		Shew_2179	0.52	-2.4
2,539,307	-		Shew_2179	0.55	-0.9
2,539,347	+		Shew_2179	0.60	-0.9
2,539,347	+		Shew_2179	0.60	+0.1
2,539,355	-		Shew_2179	0.60	-0.5
2,539,357	+		Shew_2179	0.61	-1.5
2,539,369	+		Shew_2179	0.62	-1.9
2,539,369	+		Shew_2179	0.62	+0.1
2,539,369	+		Shew_2179	0.62	-2.2
2,539,370	-		Shew_2179	0.62	-0.6
2,539,370	-		Shew_2179	0.62	-0.9
2,539,377	-		Shew_2179	0.63	-0.5
2,539,405	+		Shew_2179	0.66	-0.7
2,539,405	+		Shew_2179	0.66	+0.1
2,539,405	+		Shew_2179	0.66	-1.5
2,539,413	-		Shew_2179	0.67	+0.0
2,539,413	-		Shew_2179	0.67	-0.5
2,539,413	-		Shew_2179	0.67	-0.8
2,539,413	-		Shew_2179	0.67	-1.9
2,539,413	-		Shew_2179	0.67	-0.5
2,539,413	-		Shew_2179	0.67	-1.2
2,539,413	-		Shew_2179	0.67	-1.0
2,539,413	-		Shew_2179	0.67	+1.3
2,539,413	-		Shew_2179	0.67	+0.4
2,539,471	-		Shew_2179	0.73	+0.1
2,539,491	+		Shew_2179	0.75	-0.9
2,539,491	+		Shew_2179	0.75	-0.5
2,539,491	+		Shew_2179	0.75	+0.4
2,539,491	+		Shew_2179	0.75	-1.4
2,539,499	-		Shew_2179	0.76	-0.5
2,539,499	-		Shew_2179	0.76	-1.5
2,539,499	-		Shew_2179	0.76	-1.1
2,539,503	+		Shew_2179	0.77	+0.1
2,539,505	+		Shew_2179	0.77	-1.4
2,539,505	+		Shew_2179	0.77	+0.1
2,539,505	+		Shew_2179	0.77	+0.1
2,539,505	+		Shew_2179	0.77	-2.9
2,539,505	+		Shew_2179	0.77	-1.2
2,539,505	+		Shew_2179	0.77	+0.1
2,539,505	+		Shew_2179	0.77	-0.5
2,539,505	+		Shew_2179	0.77	-0.6
2,539,505	+		Shew_2179	0.77	+0.9
2,539,505	+		Shew_2179	0.77	+2.1
2,539,505	+		Shew_2179	0.77	+1.1
2,539,505	+		Shew_2179	0.77	-0.2
2,539,505	+		Shew_2179	0.77	-1.0
2,539,505	+		Shew_2179	0.77	-0.3
2,539,505	+		Shew_2179	0.77	+0.8
2,539,505	+		Shew_2179	0.77	+0.1
2,539,513	-		Shew_2179	0.78	-1.2
2,539,513	-		Shew_2179	0.78	+0.3
2,539,513	-		Shew_2179	0.78	-1.9
2,539,513	-		Shew_2179	0.78	-0.6
2,539,513	-		Shew_2179	0.78	-2.5
2,539,513	-		Shew_2179	0.78	-1.9
2,539,513	-		Shew_2179	0.78	-2.2
2,539,513	-		Shew_2179	0.78	-2.2
2,539,513	-		Shew_2179	0.78	-1.4
2,539,513	-		Shew_2179	0.78	+0.7
2,539,518	-		Shew_2179	0.78	-1.1
2,539,518	-		Shew_2179	0.78	-2.3
2,539,558	-		Shew_2179	0.83	-1.9
2,539,563	+		Shew_2179	0.83	+0.6
2,539,627	+				-1.0
2,539,645	-				-0.9
2,539,645	-				-0.1
2,539,648	-				-2.7
2,539,653	+				+0.1
2,539,671	-				-0.1
2,539,678	+				-0.7
2,539,684	+				-1.5
2,539,692	-				-0.8
2,539,737	-				+1.1
2,539,756	-				-0.5
2,539,782	-		Shew_2180	0.13	+1.7
2,539,786	+		Shew_2180	0.14	+0.4
2,539,821	-		Shew_2180	0.20	-0.6
2,539,867	+		Shew_2180	0.28	-1.7
2,539,888	+		Shew_2180	0.32	+0.9
2,539,896	-		Shew_2180	0.33	-0.5
2,539,896	-		Shew_2180	0.33	+1.0
2,539,897	-		Shew_2180	0.33	+0.4
2,539,946	+		Shew_2180	0.42	+2.1
2,539,954	-		Shew_2180	0.43	-0.5
2,539,954	-		Shew_2180	0.43	-0.0
2,539,954	-		Shew_2180	0.43	+0.4
2,539,954	-		Shew_2180	0.43	+1.9
2,539,956	+		Shew_2180	0.43	-2.2
2,539,962	+		Shew_2180	0.45	+0.2
2,539,964	+		Shew_2180	0.45	-0.9
2,539,964	+		Shew_2180	0.45	-0.2
2,539,964	+		Shew_2180	0.45	+2.5
2,539,964	+		Shew_2180	0.45	-0.7
2,539,964	+		Shew_2180	0.45	-0.6
2,539,969	+		Shew_2180	0.46	-1.1
2,539,969	+		Shew_2180	0.46	-0.2
2,539,971	+		Shew_2180	0.46	+0.1
2,539,971	+		Shew_2180	0.46	+1.1
2,539,972	-		Shew_2180	0.46	+1.1
2,539,972	-		Shew_2180	0.46	-1.9
2,539,972	-		Shew_2180	0.46	+1.3
2,539,972	-		Shew_2180	0.46	-2.2
2,539,972	-		Shew_2180	0.46	+0.5
2,539,977	+		Shew_2180	0.47	-0.2
2,539,978	+		Shew_2180	0.47	+0.1
2,539,978	+		Shew_2180	0.47	-1.9
2,539,978	+		Shew_2180	0.47	+0.4
2,539,979	+		Shew_2180	0.47	+0.8
2,539,979	+		Shew_2180	0.47	+1.4
2,539,985	-		Shew_2180	0.49	+2.3
2,539,985	-		Shew_2180	0.49	+0.8
2,539,985	-		Shew_2180	0.49	-0.1
2,539,985	-		Shew_2180	0.49	-0.7
2,539,985	-		Shew_2180	0.49	-0.1
2,539,985	-		Shew_2180	0.49	+0.4
2,539,985	-		Shew_2180	0.49	-0.5
2,539,985	-		Shew_2180	0.49	+0.8
2,539,986	-		Shew_2180	0.49	+1.1
2,539,986	-		Shew_2180	0.49	+0.0
2,539,987	-		Shew_2180	0.49	+1.0
2,539,987	-		Shew_2180	0.49	+1.6
2,539,987	-		Shew_2180	0.49	-0.9
2,539,987	-		Shew_2180	0.49	+1.6
2,539,987	-		Shew_2180	0.49	-0.0
2,539,987	-		Shew_2180	0.49	-1.5
2,540,058	+		Shew_2180	0.61	+0.8
2,540,066	-		Shew_2180	0.63	+0.1
2,540,066	-		Shew_2180	0.63	+0.6
2,540,081	+		Shew_2180	0.65	-1.5
2,540,098	-		Shew_2180	0.68	+0.4
2,540,171	+		Shew_2180	0.81	+0.8
2,540,201	+		Shew_2180	0.86	+0.8
2,540,228	-				-0.6
2,540,247	+				+0.1
2,540,251	+				+0.0
2,540,251	+				+0.3
2,540,252	+				-0.4
2,540,252	+				+0.1
2,540,259	-				+0.7
2,540,260	-				+0.1
2,540,260	-				-0.3
2,540,260	-				+0.6
2,540,260	-				-0.7
2,540,299	+				+0.3
2,540,338	+				+1.5
2,540,423	+				+0.2
2,540,525	-				-0.0
2,540,587	+				+1.3
2,540,587	+				-0.1
2,540,587	+				+0.1
2,540,587	+				+0.6
2,540,587	+				+0.3
2,540,587	+				+0.5
2,540,613	+				+0.7
2,540,956	-				-0.5
2,540,970	-				+0.6