Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1929 and Shew_R0064 are separated by 135 nucleotides Shew_R0064 and Shew_1930 are separated by 329 nucleotides Shew_1930 and Shew_1931 are separated by 200 nucleotides Shew_1931 and cls are separated by 166 nucleotides
Shew_1929: Shew_1929 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,227,766 to 2,229,754
_1929
Shew_R0064: Shew_R0064 - tRNA-Ser (RefSeq), at 2,229,890 to 2,229,977
_R0064
Shew_1930: Shew_1930 - CopG/DNA-binding domain-containing protein (RefSeq), at 2,230,307 to 2,230,504
_1930
Shew_1931: Shew_1931 - alkylphosphonate utilization operon protein PhnA (RefSeq), at 2,230,705 to 2,231,049
_1931
Shew_1932: cls - cardiolipin synthetase (RefSeq), at 2,231,216 to 2,232,814
cls
Position (kb)
2230
2231
2232 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2230.139 kb on - strand at 2230.744 kb on + strand, within Shew_1931 at 2230.888 kb on - strand, within Shew_1931 at 2231.505 kb on + strand, within cls at 2231.505 kb on + strand, within cls at 2231.513 kb on - strand, within cls at 2231.513 kb on - strand, within cls at 2231.641 kb on + strand, within cls
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 2,230,139 - -0.1 2,230,744 + Shew_1931 0.11 -2.9 2,230,888 - Shew_1931 0.53 -1.7 2,231,505 + cls Shew_1932 0.18 -0.7 2,231,505 + cls Shew_1932 0.18 -0.7 2,231,513 - cls Shew_1932 0.19 +0.0 2,231,513 - cls Shew_1932 0.19 +2.2 2,231,641 + cls Shew_1932 0.27 -0.9
Or see this region's nucleotide sequence