Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1663 and Shew_1664 are separated by 40 nucleotides Shew_1664 and Shew_1665 are separated by 95 nucleotides Shew_1665 and Shew_1666 are separated by 11 nucleotides
Shew_1663: Shew_1663 - hypothetical protein (RefSeq), at 1,912,571 to 1,913,092
_1663
Shew_1664: Shew_1664 - hypothetical protein (RefSeq), at 1,913,133 to 1,913,420
_1664
Shew_1665: Shew_1665 - peptidase S51, dipeptidase E (RefSeq), at 1,913,516 to 1,914,202
_1665
Shew_1666: Shew_1666 - putative esterase (RefSeq), at 1,914,214 to 1,915,551
_1666
Position (kb) 1913
1914
1915 Strain fitness (log2 ratio) -2
-1
0
1 at 1912.967 kb on - strand, within Shew_1663 at 1912.967 kb on - strand, within Shew_1663 at 1913.052 kb on + strand at 1913.086 kb on + strand at 1913.086 kb on + strand at 1913.579 kb on - strand at 1913.758 kb on - strand, within Shew_1665 at 1914.177 kb on + strand at 1914.239 kb on - strand at 1914.769 kb on + strand, within Shew_1666 at 1914.800 kb on + strand, within Shew_1666 at 1915.178 kb on + strand, within Shew_1666
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 1,912,967 - Shew_1663 0.76 +0.0 1,912,967 - Shew_1663 0.76 +0.4 1,913,052 + +0.1 1,913,086 + +0.0 1,913,086 + +0.1 1,913,579 - +0.5 1,913,758 - Shew_1665 0.35 -2.6 1,914,177 + -1.0 1,914,239 - -0.9 1,914,769 + Shew_1666 0.41 +0.1 1,914,800 + Shew_1666 0.44 +0.7 1,915,178 + Shew_1666 0.72 -1.1
Or see this region's nucleotide sequence