Strain Fitness in Shewanella loihica PV-4 around Shew_1434

Experiment: succinate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_1433 and Shew_1434 overlap by 1 nucleotidesShew_1434 and phhA are separated by 418 nucleotides Shew_1433: Shew_1433 - UDP-glucose 4-epimerase (RefSeq), at 1,647,620 to 1,648,633 _1433 Shew_1434: Shew_1434 - UTP-glucose-1-phosphate uridylyltransferase GalU (RefSeq), at 1,648,633 to 1,649,553 _1434 Shew_1435: phhA - phenylalanine 4-monooxygenase (RefSeq), at 1,649,972 to 1,650,805 phhA Position (kb) 1648 1649 1650Strain fitness (log2 ratio) -1 0 1 2 3at 1647.640 kb on + strandat 1647.759 kb on + strand, within Shew_1433at 1647.834 kb on + strand, within Shew_1433at 1647.847 kb on - strand, within Shew_1433at 1648.313 kb on - strand, within Shew_1433at 1648.315 kb on + strand, within Shew_1433at 1648.315 kb on + strand, within Shew_1433at 1648.323 kb on - strand, within Shew_1433at 1648.585 kb on - strandat 1648.637 kb on + strandat 1649.220 kb on - strand, within Shew_1434

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
remove
1,647,640 + -0.5
1,647,759 + Shew_1433 0.14 +1.2
1,647,834 + Shew_1433 0.21 +0.5
1,647,847 - Shew_1433 0.22 +0.4
1,648,313 - Shew_1433 0.68 +2.7
1,648,315 + Shew_1433 0.69 +0.5
1,648,315 + Shew_1433 0.69 +0.6
1,648,323 - Shew_1433 0.69 +2.9
1,648,585 - -1.4
1,648,637 + +0.4
1,649,220 - Shew_1434 0.64 -0.6

Or see this region's nucleotide sequence