Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0733 and Shew_0734 are separated by 237 nucleotides Shew_0734 and Shew_0735 are separated by 20 nucleotides Shew_0735 and Shew_0736 are separated by 104 nucleotides
Shew_0733: Shew_0733 - hypothetical protein (RefSeq), at 834,650 to 835,405
_0733
Shew_0734: Shew_0734 - Fe-S metabolism associated SufE (RefSeq), at 835,643 to 836,095
_0734
Shew_0735: Shew_0735 - SufS subfamily cysteine desulfurase (RefSeq), at 836,116 to 837,327
_0735
Shew_0736: Shew_0736 - aldo/keto reductase (RefSeq), at 837,432 to 838,472
_0736
Position (kb) 836
837
838 Strain fitness (log2 ratio) -2
-1
0
1 at 835.380 kb on + strand at 835.542 kb on + strand at 835.550 kb on - strand at 836.082 kb on - strand at 836.608 kb on - strand, within Shew_0735 at 836.762 kb on + strand, within Shew_0735 at 837.045 kb on - strand, within Shew_0735 at 837.097 kb on - strand, within Shew_0735 at 837.591 kb on + strand, within Shew_0736 at 837.967 kb on + strand, within Shew_0736 at 838.136 kb on - strand, within Shew_0736
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 835,380 + +0.7 835,542 + -0.3 835,550 - +0.7 836,082 - +0.6 836,608 - Shew_0735 0.41 -0.1 836,762 + Shew_0735 0.53 -2.1 837,045 - Shew_0735 0.77 -1.6 837,097 - Shew_0735 0.81 -0.6 837,591 + Shew_0736 0.15 +0.4 837,967 + Shew_0736 0.51 -0.7 838,136 - Shew_0736 0.68 -0.3
Or see this region's nucleotide sequence