Strain Fitness in Shewanella loihica PV-4 around Shew_0710

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmetH and Shew_0711 are separated by 329 nucleotides Shew_0710: metH - B12-dependent methionine synthase (RefSeq), at 807,370 to 811,092 metH Shew_0711: Shew_0711 - phosphoglycerate mutase (RefSeq), at 811,422 to 812,033 _0711 Position (kb) 807 808 809 810 811 812Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1 2at 806.994 kb on + strandat 807.308 kb on - strandat 807.375 kb on - strandat 807.555 kb on - strandat 807.713 kb on + strandat 807.730 kb on - strandat 807.757 kb on + strand, within metHat 807.852 kb on + strand, within metHat 808.188 kb on + strand, within metHat 808.606 kb on - strand, within metHat 808.744 kb on + strand, within metHat 808.757 kb on - strand, within metHat 808.777 kb on + strand, within metHat 809.018 kb on + strand, within metHat 809.143 kb on - strand, within metHat 809.217 kb on + strand, within metHat 809.290 kb on + strand, within metHat 809.412 kb on + strand, within metHat 809.672 kb on + strand, within metHat 809.686 kb on - strand, within metHat 809.688 kb on + strand, within metHat 809.696 kb on - strand, within metHat 809.722 kb on - strand, within metHat 809.835 kb on + strand, within metHat 809.947 kb on - strand, within metHat 810.038 kb on + strand, within metHat 810.128 kb on - strand, within metHat 810.245 kb on + strand, within metHat 810.245 kb on + strand, within metHat 810.245 kb on + strand, within metHat 810.253 kb on - strand, within metHat 810.626 kb on - strand, within metHat 811.517 kb on - strand, within Shew_0711at 811.548 kb on - strand, within Shew_0711at 811.558 kb on - strand, within Shew_0711at 811.686 kb on + strand, within Shew_0711at 811.689 kb on - strand, within Shew_0711at 811.691 kb on + strand, within Shew_0711at 811.696 kb on + strand, within Shew_0711

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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806,994 + +0.5
807,308 - -1.2
807,375 - -0.9
807,555 - -6.6
807,713 + -5.8
807,730 - -3.9
807,757 + metH Shew_0710 0.10 -0.3
807,852 + metH Shew_0710 0.13 -2.5
808,188 + metH Shew_0710 0.22 -5.6
808,606 - metH Shew_0710 0.33 -4.3
808,744 + metH Shew_0710 0.37 -6.4
808,757 - metH Shew_0710 0.37 -4.5
808,777 + metH Shew_0710 0.38 -0.9
809,018 + metH Shew_0710 0.44 -4.3
809,143 - metH Shew_0710 0.48 -6.1
809,217 + metH Shew_0710 0.50 -3.2
809,290 + metH Shew_0710 0.52 -3.5
809,412 + metH Shew_0710 0.55 -2.8
809,672 + metH Shew_0710 0.62 -4.3
809,686 - metH Shew_0710 0.62 -7.8
809,688 + metH Shew_0710 0.62 -2.3
809,696 - metH Shew_0710 0.62 -6.0
809,722 - metH Shew_0710 0.63 -4.6
809,835 + metH Shew_0710 0.66 -3.0
809,947 - metH Shew_0710 0.69 -1.6
810,038 + metH Shew_0710 0.72 -3.7
810,128 - metH Shew_0710 0.74 -5.5
810,245 + metH Shew_0710 0.77 -5.9
810,245 + metH Shew_0710 0.77 -4.4
810,245 + metH Shew_0710 0.77 -6.5
810,253 - metH Shew_0710 0.77 -5.4
810,626 - metH Shew_0710 0.87 -7.3
811,517 - Shew_0711 0.16 -0.2
811,548 - Shew_0711 0.21 -0.2
811,558 - Shew_0711 0.22 +2.3
811,686 + Shew_0711 0.43 -0.5
811,689 - Shew_0711 0.44 -1.0
811,691 + Shew_0711 0.44 -0.3
811,696 + Shew_0711 0.45 -0.1

Or see this region's nucleotide sequence