Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0654 and Shew_0655 overlap by 4 nucleotides Shew_0655 and Shew_0656 are separated by 24 nucleotides
Shew_0654: Shew_0654 - peptidase M16 domain-containing protein (RefSeq), at 741,108 to 742,550
_0654
Shew_0655: Shew_0655 - peptidase M16 domain-containing protein (RefSeq), at 742,547 to 743,971
_0655
Shew_0656: Shew_0656 - anaerobic nitric oxide reductase transcription regulator (RefSeq), at 743,996 to 745,531
_0656
Position (kb) 742
743
744 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 741.645 kb on + strand, within Shew_0654 at 741.671 kb on + strand, within Shew_0654 at 741.671 kb on + strand, within Shew_0654 at 741.779 kb on + strand, within Shew_0654 at 741.826 kb on - strand, within Shew_0654 at 741.826 kb on - strand, within Shew_0654 at 741.826 kb on - strand, within Shew_0654 at 741.915 kb on + strand, within Shew_0654 at 741.996 kb on - strand, within Shew_0654 at 742.103 kb on + strand, within Shew_0654 at 742.106 kb on - strand, within Shew_0654 at 742.203 kb on + strand, within Shew_0654 at 742.349 kb on + strand, within Shew_0654 at 742.459 kb on + strand at 742.648 kb on + strand at 742.649 kb on + strand at 742.855 kb on + strand, within Shew_0655 at 742.861 kb on + strand, within Shew_0655 at 742.986 kb on + strand, within Shew_0655 at 742.986 kb on + strand, within Shew_0655 at 743.011 kb on + strand, within Shew_0655 at 743.128 kb on + strand, within Shew_0655 at 743.262 kb on - strand, within Shew_0655 at 743.703 kb on + strand, within Shew_0655 at 743.766 kb on - strand, within Shew_0655 at 743.809 kb on + strand, within Shew_0655 at 743.809 kb on + strand, within Shew_0655 at 743.817 kb on - strand, within Shew_0655 at 743.854 kb on + strand at 744.007 kb on - strand at 744.088 kb on + strand at 744.104 kb on + strand at 744.130 kb on - strand at 744.179 kb on + strand, within Shew_0656 at 744.179 kb on + strand, within Shew_0656 at 744.187 kb on - strand, within Shew_0656 at 744.345 kb on - strand, within Shew_0656 at 744.418 kb on + strand, within Shew_0656 at 744.773 kb on + strand, within Shew_0656 at 744.922 kb on + strand, within Shew_0656
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 741,645 + Shew_0654 0.37 -0.2 741,671 + Shew_0654 0.39 -0.5 741,671 + Shew_0654 0.39 -0.2 741,779 + Shew_0654 0.47 +0.6 741,826 - Shew_0654 0.50 +0.7 741,826 - Shew_0654 0.50 -0.3 741,826 - Shew_0654 0.50 -0.2 741,915 + Shew_0654 0.56 -1.0 741,996 - Shew_0654 0.62 -0.4 742,103 + Shew_0654 0.69 -0.2 742,106 - Shew_0654 0.69 +2.7 742,203 + Shew_0654 0.76 -0.3 742,349 + Shew_0654 0.86 -0.4 742,459 + +0.5 742,648 + -0.2 742,649 + -0.0 742,855 + Shew_0655 0.22 -0.3 742,861 + Shew_0655 0.22 -1.2 742,986 + Shew_0655 0.31 +1.2 742,986 + Shew_0655 0.31 +0.7 743,011 + Shew_0655 0.33 -0.3 743,128 + Shew_0655 0.41 -0.7 743,262 - Shew_0655 0.50 -0.9 743,703 + Shew_0655 0.81 -0.3 743,766 - Shew_0655 0.86 -2.5 743,809 + Shew_0655 0.89 +0.1 743,809 + Shew_0655 0.89 -0.5 743,817 - Shew_0655 0.89 +0.0 743,854 + -1.1 744,007 - +0.1 744,088 + +2.8 744,104 + +0.6 744,130 - -0.4 744,179 + Shew_0656 0.12 +0.2 744,179 + Shew_0656 0.12 -0.0 744,187 - Shew_0656 0.12 -0.1 744,345 - Shew_0656 0.23 +1.7 744,418 + Shew_0656 0.27 -0.1 744,773 + Shew_0656 0.51 +0.5 744,922 + Shew_0656 0.60 +0.6
Or see this region's nucleotide sequence