Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0638 and Shew_0639 are separated by 78 nucleotides Shew_0639 and Shew_0640 are separated by 32 nucleotides Shew_0640 and Shew_0641 overlap by 13 nucleotides Shew_0641 and Shew_0642 are separated by 1 nucleotides
Shew_0638: Shew_0638 - cell surface receptor IPT/TIG domain-containing protein (RefSeq), at 724,655 to 728,878
_0638
Shew_0639: Shew_0639 - hypothetical protein (RefSeq), at 728,957 to 729,604
_0639
Shew_0640: Shew_0640 - TPR repeat-containing protein (RefSeq), at 729,637 to 730,119
_0640
Shew_0641: Shew_0641 - hypothetical protein (RefSeq), at 730,107 to 730,451
_0641
Shew_0642: Shew_0642 - type II secretion system protein (RefSeq), at 730,453 to 731,316
_0642
Position (kb) 729
730
731 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 728.820 kb on + strand at 728.828 kb on + strand at 729.145 kb on + strand, within Shew_0639 at 729.365 kb on + strand, within Shew_0639 at 729.373 kb on - strand, within Shew_0639 at 729.373 kb on - strand, within Shew_0639 at 729.373 kb on - strand, within Shew_0639 at 729.373 kb on - strand, within Shew_0639 at 729.373 kb on - strand, within Shew_0639 at 729.465 kb on - strand, within Shew_0639 at 729.470 kb on + strand, within Shew_0639 at 729.504 kb on - strand, within Shew_0639 at 729.792 kb on - strand, within Shew_0640 at 730.289 kb on + strand, within Shew_0641 at 730.289 kb on + strand, within Shew_0641 at 730.374 kb on - strand, within Shew_0641 at 730.605 kb on - strand, within Shew_0642 at 730.605 kb on - strand, within Shew_0642 at 730.839 kb on - strand, within Shew_0642 at 730.983 kb on + strand, within Shew_0642 at 731.052 kb on + strand, within Shew_0642
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 728,820 + -2.2 728,828 + +0.9 729,145 + Shew_0639 0.29 -0.6 729,365 + Shew_0639 0.63 +0.4 729,373 - Shew_0639 0.64 +1.2 729,373 - Shew_0639 0.64 +1.4 729,373 - Shew_0639 0.64 +0.1 729,373 - Shew_0639 0.64 +0.2 729,373 - Shew_0639 0.64 -1.3 729,465 - Shew_0639 0.78 -0.8 729,470 + Shew_0639 0.79 +0.8 729,504 - Shew_0639 0.84 +0.5 729,792 - Shew_0640 0.32 -0.9 730,289 + Shew_0641 0.53 -3.0 730,289 + Shew_0641 0.53 -0.2 730,374 - Shew_0641 0.77 +0.1 730,605 - Shew_0642 0.18 -0.4 730,605 - Shew_0642 0.18 +0.2 730,839 - Shew_0642 0.45 +0.9 730,983 + Shew_0642 0.61 -1.1 731,052 + Shew_0642 0.69 +0.4
Or see this region's nucleotide sequence