Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0593 and Shew_0594 are separated by 174 nucleotides Shew_0594 and Shew_0595 are separated by 65 nucleotides Shew_0595 and Shew_0596 are separated by 100 nucleotides Shew_0596 and Shew_0597 are separated by 256 nucleotides
Shew_0593: Shew_0593 - ABC transporter-related protein (RefSeq), at 669,986 to 671,896
_0593
Shew_0594: Shew_0594 - hypothetical protein (RefSeq), at 672,071 to 672,271
_0594
Shew_0595: Shew_0595 - hypothetical protein (RefSeq), at 672,337 to 672,648
_0595
Shew_0596: Shew_0596 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 672,749 to 674,671
_0596
Shew_0597: Shew_0597 - major facilitator transporter (RefSeq), at 674,928 to 676,355
_0597
Position (kb) 672
673
674
675 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 671.954 kb on + strand at 672.136 kb on + strand, within Shew_0594 at 672.136 kb on + strand, within Shew_0594 at 672.219 kb on - strand, within Shew_0594 at 672.267 kb on - strand at 672.516 kb on + strand, within Shew_0595 at 672.982 kb on - strand, within Shew_0596 at 673.357 kb on - strand, within Shew_0596 at 673.435 kb on + strand, within Shew_0596 at 673.548 kb on + strand, within Shew_0596 at 673.588 kb on - strand, within Shew_0596 at 674.014 kb on + strand, within Shew_0596 at 674.022 kb on - strand, within Shew_0596 at 674.131 kb on + strand, within Shew_0596 at 674.169 kb on - strand, within Shew_0596 at 674.265 kb on + strand, within Shew_0596 at 674.289 kb on + strand, within Shew_0596 at 674.420 kb on + strand, within Shew_0596 at 674.624 kb on + strand at 674.632 kb on - strand at 674.680 kb on + strand at 674.680 kb on + strand at 674.688 kb on - strand at 674.688 kb on - strand at 674.688 kb on - strand at 674.705 kb on - strand at 675.175 kb on + strand, within Shew_0597 at 675.213 kb on - strand, within Shew_0597 at 675.215 kb on + strand, within Shew_0597 at 675.219 kb on + strand, within Shew_0597 at 675.297 kb on + strand, within Shew_0597 at 675.307 kb on + strand, within Shew_0597 at 675.307 kb on + strand, within Shew_0597 at 675.315 kb on - strand, within Shew_0597 at 675.315 kb on - strand, within Shew_0597 at 675.315 kb on - strand, within Shew_0597 at 675.656 kb on + strand, within Shew_0597 at 675.656 kb on + strand, within Shew_0597 at 675.664 kb on - strand, within Shew_0597 at 675.664 kb on - strand, within Shew_0597 at 675.664 kb on - strand, within Shew_0597
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 671,954 + +0.2 672,136 + Shew_0594 0.32 -3.9 672,136 + Shew_0594 0.32 -3.4 672,219 - Shew_0594 0.74 -0.3 672,267 - -3.3 672,516 + Shew_0595 0.57 -0.5 672,982 - Shew_0596 0.12 -0.2 673,357 - Shew_0596 0.32 +0.8 673,435 + Shew_0596 0.36 +0.2 673,548 + Shew_0596 0.42 +1.0 673,588 - Shew_0596 0.44 +0.5 674,014 + Shew_0596 0.66 +0.2 674,022 - Shew_0596 0.66 -0.3 674,131 + Shew_0596 0.72 -0.2 674,169 - Shew_0596 0.74 -0.1 674,265 + Shew_0596 0.79 -0.0 674,289 + Shew_0596 0.80 +1.3 674,420 + Shew_0596 0.87 +0.2 674,624 + -0.4 674,632 - -0.9 674,680 + +0.6 674,680 + -0.7 674,688 - -0.4 674,688 - +2.2 674,688 - +0.4 674,705 - -0.2 675,175 + Shew_0597 0.17 +1.1 675,213 - Shew_0597 0.20 +0.1 675,215 + Shew_0597 0.20 +0.7 675,219 + Shew_0597 0.20 +0.2 675,297 + Shew_0597 0.26 -0.1 675,307 + Shew_0597 0.27 -0.7 675,307 + Shew_0597 0.27 -2.0 675,315 - Shew_0597 0.27 -0.8 675,315 - Shew_0597 0.27 +0.8 675,315 - Shew_0597 0.27 +2.4 675,656 + Shew_0597 0.51 -1.2 675,656 + Shew_0597 0.51 -2.0 675,664 - Shew_0597 0.52 -0.1 675,664 - Shew_0597 0.52 +0.6 675,664 - Shew_0597 0.52 +0.5
Or see this region's nucleotide sequence