Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0586 and Shew_0587 are separated by 336 nucleotides Shew_0587 and Shew_0588 are separated by 83 nucleotides Shew_0588 and Shew_0589 are separated by 2 nucleotides
Shew_0586: Shew_0586 - TPR repeat-containing protein (RefSeq), at 663,695 to 664,474
_0586
Shew_0587: Shew_0587 - phosphoribulokinase (RefSeq), at 664,811 to 665,698
_0587
Shew_0588: Shew_0588 - hypothetical protein (RefSeq), at 665,782 to 666,045
_0588
Shew_0589: Shew_0589 - alpha/beta hydrolase fold (RefSeq), at 666,048 to 667,031
_0589
Position (kb) 664
665
666 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 663.932 kb on - strand, within Shew_0586 at 664.125 kb on + strand, within Shew_0586 at 664.238 kb on - strand, within Shew_0586 at 664.477 kb on - strand at 664.877 kb on + strand at 664.915 kb on + strand, within Shew_0587 at 665.028 kb on - strand, within Shew_0587 at 665.048 kb on + strand, within Shew_0587 at 665.053 kb on + strand, within Shew_0587 at 665.053 kb on + strand, within Shew_0587 at 665.053 kb on + strand, within Shew_0587 at 665.053 kb on + strand, within Shew_0587 at 665.061 kb on - strand, within Shew_0587 at 665.061 kb on - strand, within Shew_0587 at 665.068 kb on + strand, within Shew_0587 at 665.142 kb on - strand, within Shew_0587 at 665.142 kb on - strand, within Shew_0587 at 665.266 kb on + strand, within Shew_0587 at 665.308 kb on - strand, within Shew_0587 at 665.407 kb on + strand, within Shew_0587 at 665.423 kb on + strand, within Shew_0587 at 665.431 kb on - strand, within Shew_0587 at 665.780 kb on + strand at 665.780 kb on + strand at 665.920 kb on + strand, within Shew_0588 at 666.152 kb on + strand, within Shew_0589 at 666.160 kb on - strand, within Shew_0589
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 663,932 - Shew_0586 0.30 +0.7 664,125 + Shew_0586 0.55 -0.1 664,238 - Shew_0586 0.70 +0.4 664,477 - +0.6 664,877 + -0.3 664,915 + Shew_0587 0.12 -1.4 665,028 - Shew_0587 0.24 -0.8 665,048 + Shew_0587 0.27 -1.3 665,053 + Shew_0587 0.27 -2.4 665,053 + Shew_0587 0.27 +0.5 665,053 + Shew_0587 0.27 -1.1 665,053 + Shew_0587 0.27 -1.8 665,061 - Shew_0587 0.28 -1.3 665,061 - Shew_0587 0.28 -1.1 665,068 + Shew_0587 0.29 -0.8 665,142 - Shew_0587 0.37 -1.9 665,142 - Shew_0587 0.37 -3.4 665,266 + Shew_0587 0.51 -1.3 665,308 - Shew_0587 0.56 -1.7 665,407 + Shew_0587 0.67 -2.3 665,423 + Shew_0587 0.69 -0.3 665,431 - Shew_0587 0.70 -1.2 665,780 + -0.9 665,780 + -0.1 665,920 + Shew_0588 0.52 -1.2 666,152 + Shew_0589 0.11 -0.2 666,160 - Shew_0589 0.11 +0.0
Or see this region's nucleotide sequence