Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0460 and Shew_0461 are separated by 72 nucleotides Shew_0461 and Shew_0462 are separated by 312 nucleotides Shew_0462 and Shew_0463 are separated by 118 nucleotides Shew_0463 and Shew_0464 are separated by 52 nucleotides
Shew_0460: Shew_0460 - hypothetical protein (RefSeq), at 516,184 to 518,583
_0460
Shew_0461: Shew_0461 - hypothetical protein (RefSeq), at 518,656 to 519,195
_0461
Shew_0462: Shew_0462 - hypothetical protein (RefSeq), at 519,508 to 519,813
_0462
Shew_0463: Shew_0463 - hypothetical protein (RefSeq), at 519,932 to 520,315
_0463
Shew_0464: Shew_0464 - hypothetical protein (RefSeq), at 520,368 to 520,751
_0464
Position (kb) 519
520 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 518.791 kb on - strand, within Shew_0461 at 518.833 kb on + strand, within Shew_0461 at 519.049 kb on + strand, within Shew_0461 at 519.157 kb on - strand at 519.454 kb on + strand at 519.640 kb on - strand, within Shew_0462 at 520.076 kb on + strand, within Shew_0463 at 520.084 kb on - strand, within Shew_0463 at 520.113 kb on + strand, within Shew_0463 at 520.248 kb on + strand, within Shew_0463 at 520.339 kb on + strand at 520.396 kb on + strand at 520.404 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 518,791 - Shew_0461 0.25 -0.1 518,833 + Shew_0461 0.33 -0.6 519,049 + Shew_0461 0.73 -0.8 519,157 - -1.1 519,454 + -1.3 519,640 - Shew_0462 0.43 -1.5 520,076 + Shew_0463 0.38 -0.3 520,084 - Shew_0463 0.40 -2.9 520,113 + Shew_0463 0.47 +1.6 520,248 + Shew_0463 0.82 +1.8 520,339 + +0.1 520,396 + +0.2 520,404 - +1.3
Or see this region's nucleotide sequence