Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0443 and Shew_0444 are separated by 144 nucleotides Shew_0444 and Shew_0445 are separated by 124 nucleotides
Shew_0443: Shew_0443 - formate--tetrahydrofolate ligase (RefSeq), at 493,192 to 494,886
_0443
Shew_0444: Shew_0444 - MscS mechanosensitive ion channel (RefSeq), at 495,031 to 496,653
_0444
Shew_0445: Shew_0445 - hypothetical protein (RefSeq), at 496,778 to 497,113
_0445
Position (kb) 495
496
497 Strain fitness (log2 ratio) -1
0
1
2 at 494.107 kb on - strand, within Shew_0443 at 494.729 kb on + strand at 494.800 kb on - strand at 494.880 kb on + strand at 494.880 kb on + strand at 494.880 kb on + strand at 494.880 kb on + strand at 494.880 kb on + strand at 494.888 kb on - strand at 495.159 kb on + strand at 495.328 kb on + strand, within Shew_0444 at 495.448 kb on - strand, within Shew_0444 at 495.549 kb on + strand, within Shew_0444 at 495.585 kb on - strand, within Shew_0444 at 496.039 kb on + strand, within Shew_0444 at 496.097 kb on - strand, within Shew_0444 at 496.139 kb on - strand, within Shew_0444 at 496.407 kb on - strand, within Shew_0444 at 496.433 kb on - strand, within Shew_0444 at 496.606 kb on + strand at 496.702 kb on - strand at 496.737 kb on + strand at 496.796 kb on + strand at 496.984 kb on + strand, within Shew_0445 at 497.051 kb on - strand, within Shew_0445 at 497.221 kb on + strand at 497.229 kb on - strand at 497.229 kb on - strand at 497.250 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 494,107 - Shew_0443 0.54 -1.1 494,729 + +0.0 494,800 - +0.0 494,880 + +0.9 494,880 + -0.7 494,880 + -1.1 494,880 + +0.6 494,880 + +0.0 494,888 - -0.0 495,159 + -0.7 495,328 + Shew_0444 0.18 -0.2 495,448 - Shew_0444 0.26 +0.5 495,549 + Shew_0444 0.32 -0.2 495,585 - Shew_0444 0.34 +2.1 496,039 + Shew_0444 0.62 +0.4 496,097 - Shew_0444 0.66 -1.0 496,139 - Shew_0444 0.68 +0.1 496,407 - Shew_0444 0.85 +0.3 496,433 - Shew_0444 0.86 +1.3 496,606 + -1.4 496,702 - +0.3 496,737 + +0.8 496,796 + -0.9 496,984 + Shew_0445 0.61 -0.6 497,051 - Shew_0445 0.81 -0.8 497,221 + -0.0 497,229 - +0.1 497,229 - -0.0 497,250 - -0.6
Or see this region's nucleotide sequence