Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0258 and Shew_0259 are separated by 112 nucleotides Shew_0259 and Shew_0260 are separated by 322 nucleotides
Shew_0258: Shew_0258 - hypothetical protein (RefSeq), at 277,754 to 278,701
_0258
Shew_0259: Shew_0259 - hypothetical protein (RefSeq), at 278,814 to 279,215
_0259
Shew_0260: Shew_0260 - hypothetical protein (RefSeq), at 279,538 to 280,386
_0260
Position (kb) 278
279
280 Strain fitness (log2 ratio) -2
-1
0
1 at 277.894 kb on + strand, within Shew_0258 at 278.082 kb on - strand, within Shew_0258 at 278.084 kb on + strand, within Shew_0258 at 278.084 kb on + strand, within Shew_0258 at 278.092 kb on - strand, within Shew_0258 at 278.092 kb on - strand, within Shew_0258 at 278.187 kb on + strand, within Shew_0258 at 278.187 kb on + strand, within Shew_0258 at 278.195 kb on - strand, within Shew_0258 at 278.453 kb on - strand, within Shew_0258 at 278.453 kb on - strand, within Shew_0258 at 278.562 kb on - strand, within Shew_0258 at 278.562 kb on - strand, within Shew_0258 at 278.613 kb on + strand at 278.847 kb on - strand at 278.902 kb on + strand, within Shew_0259 at 279.095 kb on + strand, within Shew_0259 at 279.103 kb on - strand, within Shew_0259 at 279.239 kb on + strand at 279.256 kb on - strand at 279.515 kb on + strand at 279.583 kb on - strand at 279.593 kb on - strand at 279.598 kb on - strand at 279.875 kb on - strand, within Shew_0260 at 279.972 kb on + strand, within Shew_0260 at 280.112 kb on + strand, within Shew_0260
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 277,894 + Shew_0258 0.15 +0.7 278,082 - Shew_0258 0.35 -1.5 278,084 + Shew_0258 0.35 -0.2 278,084 + Shew_0258 0.35 +0.3 278,092 - Shew_0258 0.36 +0.0 278,092 - Shew_0258 0.36 -0.6 278,187 + Shew_0258 0.46 +0.1 278,187 + Shew_0258 0.46 +0.1 278,195 - Shew_0258 0.47 +0.1 278,453 - Shew_0258 0.74 +0.4 278,453 - Shew_0258 0.74 -0.0 278,562 - Shew_0258 0.85 -1.3 278,562 - Shew_0258 0.85 -2.0 278,613 + +1.0 278,847 - +0.6 278,902 + Shew_0259 0.22 -0.5 279,095 + Shew_0259 0.70 -1.6 279,103 - Shew_0259 0.72 +0.0 279,239 + +0.9 279,256 - +0.3 279,515 + -1.3 279,583 - -1.9 279,593 - -0.6 279,598 - +1.2 279,875 - Shew_0260 0.40 -1.2 279,972 + Shew_0260 0.51 +0.0 280,112 + Shew_0260 0.68 -0.3
Or see this region's nucleotide sequence