Strain Fitness in Shewanella loihica PV-4 around Shew_0252

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0251 and Shew_0252 are separated by 144 nucleotidesShew_0252 and Shew_0253 overlap by 11 nucleotides Shew_0251: Shew_0251 - phage integrase family protein (RefSeq), at 270,161 to 270,757 _0251 Shew_0252: Shew_0252 - hypothetical protein (RefSeq), at 270,902 to 271,894 _0252 Shew_0253: Shew_0253 - secretion protein HlyD family protein (RefSeq), at 271,884 to 272,990 _0253 Position (kb) 270 271 272Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 269.986 kb on + strandat 270.053 kb on + strandat 270.065 kb on - strandat 270.095 kb on + strandat 270.275 kb on + strand, within Shew_0251at 270.283 kb on - strand, within Shew_0251at 270.295 kb on - strand, within Shew_0251at 270.332 kb on - strand, within Shew_0251at 270.353 kb on + strand, within Shew_0251at 270.446 kb on - strand, within Shew_0251at 270.511 kb on - strand, within Shew_0251at 270.620 kb on + strand, within Shew_0251at 270.723 kb on - strandat 270.734 kb on - strandat 270.802 kb on - strandat 270.808 kb on + strandat 270.816 kb on - strandat 270.845 kb on - strandat 270.874 kb on + strandat 270.908 kb on - strandat 270.955 kb on - strandat 270.955 kb on - strandat 271.000 kb on + strandat 271.015 kb on + strand, within Shew_0252at 271.068 kb on + strand, within Shew_0252at 271.069 kb on + strand, within Shew_0252at 271.132 kb on + strand, within Shew_0252at 271.140 kb on + strand, within Shew_0252at 271.188 kb on + strand, within Shew_0252at 271.196 kb on - strand, within Shew_0252at 271.204 kb on + strand, within Shew_0252at 271.209 kb on + strand, within Shew_0252at 271.209 kb on + strand, within Shew_0252at 271.209 kb on + strand, within Shew_0252at 271.212 kb on - strand, within Shew_0252at 271.217 kb on - strand, within Shew_0252at 271.217 kb on - strand, within Shew_0252at 271.231 kb on - strand, within Shew_0252at 271.303 kb on + strand, within Shew_0252at 271.320 kb on + strand, within Shew_0252at 271.338 kb on - strand, within Shew_0252at 271.464 kb on - strand, within Shew_0252at 271.510 kb on + strand, within Shew_0252at 271.518 kb on - strand, within Shew_0252at 271.518 kb on - strand, within Shew_0252at 271.518 kb on - strand, within Shew_0252at 271.518 kb on - strand, within Shew_0252at 271.518 kb on - strand, within Shew_0252at 271.518 kb on - strand, within Shew_0252at 271.564 kb on - strand, within Shew_0252at 271.604 kb on + strand, within Shew_0252at 271.612 kb on + strand, within Shew_0252at 271.657 kb on - strand, within Shew_0252at 271.810 kb on - strandat 271.810 kb on - strandat 271.894 kb on - strandat 271.958 kb on - strandat 271.963 kb on - strandat 271.977 kb on + strandat 271.979 kb on - strandat 272.162 kb on + strand, within Shew_0253at 272.279 kb on - strand, within Shew_0253at 272.631 kb on - strand, within Shew_0253at 272.669 kb on - strand, within Shew_0253at 272.757 kb on - strand, within Shew_0253at 272.801 kb on + strand, within Shew_0253at 272.801 kb on + strand, within Shew_0253at 272.809 kb on - strand, within Shew_0253at 272.809 kb on - strand, within Shew_0253at 272.886 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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269,986 + -0.3
270,053 + +0.4
270,065 - +0.2
270,095 + +1.6
270,275 + Shew_0251 0.19 -0.6
270,283 - Shew_0251 0.20 -2.9
270,295 - Shew_0251 0.22 +0.4
270,332 - Shew_0251 0.29 +1.0
270,353 + Shew_0251 0.32 -0.2
270,446 - Shew_0251 0.48 -0.9
270,511 - Shew_0251 0.59 +0.2
270,620 + Shew_0251 0.77 +0.0
270,723 - -0.3
270,734 - -0.3
270,802 - -0.1
270,808 + +1.0
270,816 - -0.2
270,845 - +1.4
270,874 + +1.1
270,908 - -0.6
270,955 - +0.3
270,955 - +0.6
271,000 + +0.2
271,015 + Shew_0252 0.11 +1.5
271,068 + Shew_0252 0.17 +0.3
271,069 + Shew_0252 0.17 -2.6
271,132 + Shew_0252 0.23 -0.3
271,140 + Shew_0252 0.24 -1.3
271,188 + Shew_0252 0.29 +0.2
271,196 - Shew_0252 0.30 +0.2
271,204 + Shew_0252 0.30 -0.2
271,209 + Shew_0252 0.31 -0.6
271,209 + Shew_0252 0.31 -0.6
271,209 + Shew_0252 0.31 +0.1
271,212 - Shew_0252 0.31 -1.1
271,217 - Shew_0252 0.32 -0.1
271,217 - Shew_0252 0.32 +0.4
271,231 - Shew_0252 0.33 -0.2
271,303 + Shew_0252 0.40 +0.1
271,320 + Shew_0252 0.42 +0.8
271,338 - Shew_0252 0.44 +0.2
271,464 - Shew_0252 0.57 +0.2
271,510 + Shew_0252 0.61 +0.5
271,518 - Shew_0252 0.62 -1.0
271,518 - Shew_0252 0.62 +0.1
271,518 - Shew_0252 0.62 +1.3
271,518 - Shew_0252 0.62 +0.9
271,518 - Shew_0252 0.62 +2.2
271,518 - Shew_0252 0.62 +0.8
271,564 - Shew_0252 0.67 +0.8
271,604 + Shew_0252 0.71 -0.0
271,612 + Shew_0252 0.72 +0.0
271,657 - Shew_0252 0.76 +0.9
271,810 - +0.5
271,810 - +0.0
271,894 - -0.1
271,958 - -0.4
271,963 - +1.6
271,977 + -0.0
271,979 - +1.0
272,162 + Shew_0253 0.25 +1.3
272,279 - Shew_0253 0.36 +0.0
272,631 - Shew_0253 0.67 +0.0
272,669 - Shew_0253 0.71 -0.2
272,757 - Shew_0253 0.79 -0.8
272,801 + Shew_0253 0.83 +0.5
272,801 + Shew_0253 0.83 -0.2
272,809 - Shew_0253 0.84 +0.7
272,809 - Shew_0253 0.84 -0.0
272,886 - -0.1

Or see this region's nucleotide sequence