Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0212 and Shew_0213 are separated by 215 nucleotides Shew_0213 and Shew_0214 are separated by 15 nucleotides Shew_0214 and Shew_0215 are separated by 16 nucleotides
Shew_0212: Shew_0212 - type IV pilus secretin PilQ (RefSeq), at 226,517 to 228,568
_0212
Shew_0213: Shew_0213 - shikimate kinase I (RefSeq), at 228,784 to 229,299
_0213
Shew_0214: Shew_0214 - 3-dehydroquinate synthase (RefSeq), at 229,315 to 230,391
_0214
Shew_0215: Shew_0215 - sporulation domain-containing protein (RefSeq), at 230,408 to 231,943
_0215
Position (kb) 229
230
231 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 228.315 kb on - strand, within Shew_0212 at 228.329 kb on - strand, within Shew_0212 at 228.366 kb on + strand at 228.381 kb on - strand at 228.552 kb on + strand at 229.593 kb on - strand, within Shew_0214 at 229.767 kb on + strand, within Shew_0214 at 229.775 kb on - strand, within Shew_0214 at 229.827 kb on - strand, within Shew_0214 at 229.915 kb on - strand, within Shew_0214 at 229.991 kb on - strand, within Shew_0214 at 230.060 kb on - strand, within Shew_0214 at 230.522 kb on + strand at 230.579 kb on - strand, within Shew_0215 at 230.721 kb on + strand, within Shew_0215 at 230.769 kb on - strand, within Shew_0215 at 230.791 kb on + strand, within Shew_0215 at 230.937 kb on - strand, within Shew_0215 at 231.046 kb on - strand, within Shew_0215 at 231.287 kb on - strand, within Shew_0215
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 228,315 - Shew_0212 0.88 +1.2 228,329 - Shew_0212 0.88 -1.5 228,366 + +0.2 228,381 - -2.5 228,552 + +0.1 229,593 - Shew_0214 0.26 -2.0 229,767 + Shew_0214 0.42 -3.4 229,775 - Shew_0214 0.43 -2.5 229,827 - Shew_0214 0.48 -1.8 229,915 - Shew_0214 0.56 -1.5 229,991 - Shew_0214 0.63 -3.4 230,060 - Shew_0214 0.69 -2.0 230,522 + +0.1 230,579 - Shew_0215 0.11 -0.0 230,721 + Shew_0215 0.20 +0.6 230,769 - Shew_0215 0.24 +0.1 230,791 + Shew_0215 0.25 -0.7 230,937 - Shew_0215 0.34 -3.0 231,046 - Shew_0215 0.42 +0.2 231,287 - Shew_0215 0.57 +0.3
Or see this region's nucleotide sequence