Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0044 and Shew_0045 overlap by 4 nucleotides Shew_0045 and Shew_0046 are separated by 181 nucleotides
Shew_0044: Shew_0044 - acriflavin resistance protein (RefSeq), at 51,810 to 54,920
_0044
Shew_0045: Shew_0045 - RND family efflux transporter MFP subunit (RefSeq), at 54,917 to 55,987
_0045
Shew_0046: Shew_0046 - molybdenum cofactor synthesis domain-containing protein (RefSeq), at 56,169 to 57,416
_0046
Position (kb) 54
55
56 Strain fitness (log2 ratio) -2
-1
0
1 at 54.009 kb on - strand, within Shew_0044 at 54.009 kb on - strand, within Shew_0044 at 54.105 kb on + strand, within Shew_0044 at 54.113 kb on - strand, within Shew_0044 at 54.689 kb on - strand at 54.689 kb on - strand at 54.689 kb on - strand at 55.077 kb on + strand, within Shew_0045 at 55.085 kb on - strand, within Shew_0045 at 55.356 kb on - strand, within Shew_0045 at 55.560 kb on + strand, within Shew_0045 at 55.648 kb on - strand, within Shew_0045 at 55.746 kb on + strand, within Shew_0045 at 55.749 kb on + strand, within Shew_0045 at 55.749 kb on + strand, within Shew_0045 at 55.749 kb on + strand, within Shew_0045 at 55.757 kb on - strand, within Shew_0045 at 55.798 kb on + strand, within Shew_0045 at 55.891 kb on - strand at 56.100 kb on - strand at 56.100 kb on - strand at 56.418 kb on + strand, within Shew_0046 at 56.517 kb on + strand, within Shew_0046 at 56.698 kb on + strand, within Shew_0046 at 56.717 kb on + strand, within Shew_0046 at 56.725 kb on - strand, within Shew_0046
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 54,009 - Shew_0044 0.71 -0.4 54,009 - Shew_0044 0.71 -2.7 54,105 + Shew_0044 0.74 -2.3 54,113 - Shew_0044 0.74 -0.2 54,689 - -0.3 54,689 - +0.4 54,689 - -0.5 55,077 + Shew_0045 0.15 -1.7 55,085 - Shew_0045 0.16 -0.6 55,356 - Shew_0045 0.41 +0.1 55,560 + Shew_0045 0.60 -1.4 55,648 - Shew_0045 0.68 -0.5 55,746 + Shew_0045 0.77 +0.7 55,749 + Shew_0045 0.78 -0.1 55,749 + Shew_0045 0.78 -0.5 55,749 + Shew_0045 0.78 -0.2 55,757 - Shew_0045 0.78 -2.4 55,798 + Shew_0045 0.82 +0.1 55,891 - -0.9 56,100 - -0.2 56,100 - +0.1 56,418 + Shew_0046 0.20 -0.3 56,517 + Shew_0046 0.28 -0.8 56,698 + Shew_0046 0.42 -1.1 56,717 + Shew_0046 0.44 -0.6 56,725 - Shew_0046 0.45 -0.2
Or see this region's nucleotide sequence