Experiment: Light Dark first sampling rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_B2615 and parB are separated by 102 nucleotides parB and parA overlap by 4 nucleotides parA and sepA2 are separated by 133 nucleotides sepA2 and septT2 are separated by 10 nucleotides septT2 and Synpcc7942_B2654 overlap by 4 nucleotides
Synpcc7942_B2615: Synpcc7942_B2615 - hypothetical protein, at 65 to 394
_B2615
Synpcc7942_B2626: parB - hypothetical protein, at 497 to 1,321
parB
Synpcc7942_B2637: parA - ParA-like protein, at 1,318 to 1,929
parA
Synpcc7942_B2648: sepA2 - hypothetical protein, at 2,063 to 2,329
sepA2
Synpcc7942_B2659: septT2 - nucleic acid-binding protein,contains PIN domain, at 2,340 to 2,723
septT2
Synpcc7942_B2654: Synpcc7942_B2654 - hypothetical protein, at 2,720 to 3,070
_B2654
Position (kb) 1
2 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 0.322 kb on + strand, within Synpcc7942_B2615 at 0.360 kb on + strand, within Synpcc7942_B2615 at 0.360 kb on + strand, within Synpcc7942_B2615 at 0.360 kb on + strand, within Synpcc7942_B2615 at 0.373 kb on + strand at 0.373 kb on + strand at 0.373 kb on + strand at 0.373 kb on + strand at 0.373 kb on + strand at 0.373 kb on + strand at 0.373 kb on + strand at 0.373 kb on + strand at 0.373 kb on + strand at 0.373 kb on + strand at 0.381 kb on - strand at 0.381 kb on - strand at 0.381 kb on - strand at 0.381 kb on - strand at 0.381 kb on - strand at 0.381 kb on - strand at 0.396 kb on + strand at 0.401 kb on + strand at 0.401 kb on + strand at 0.401 kb on + strand at 0.401 kb on + strand at 0.401 kb on + strand at 0.404 kb on - strand at 0.404 kb on - strand at 0.407 kb on - strand at 0.409 kb on - strand at 0.409 kb on - strand at 0.409 kb on - strand at 0.414 kb on - strand at 0.414 kb on - strand at 0.414 kb on - strand at 0.431 kb on + strand at 0.495 kb on + strand at 0.495 kb on + strand at 0.495 kb on + strand at 0.495 kb on + strand at 0.510 kb on + strand at 0.512 kb on + strand at 0.514 kb on + strand at 0.565 kb on - strand at 0.601 kb on - strand, within parB at 0.651 kb on + strand, within parB at 0.680 kb on + strand, within parB at 0.748 kb on + strand, within parB at 0.756 kb on - strand, within parB at 0.855 kb on + strand, within parB at 0.877 kb on - strand, within parB at 1.007 kb on + strand, within parB at 1.192 kb on - strand, within parB at 1.218 kb on + strand, within parB at 1.293 kb on - strand at 1.293 kb on - strand at 1.295 kb on + strand at 1.303 kb on - strand at 1.340 kb on - strand at 1.362 kb on - strand at 1.380 kb on + strand, within parA at 1.380 kb on + strand, within parA at 1.382 kb on - strand, within parA at 1.435 kb on + strand, within parA at 1.473 kb on + strand, within parA at 1.514 kb on + strand, within parA at 1.516 kb on - strand at 1.567 kb on + strand, within parA at 1.573 kb on - strand, within parA at 1.630 kb on + strand, within parA at 1.643 kb on - strand, within parA at 1.657 kb on - strand, within parA at 1.678 kb on - strand, within parA at 1.691 kb on - strand, within parA at 1.710 kb on - strand, within parA at 1.710 kb on - strand at 1.756 kb on + strand, within parA at 1.756 kb on + strand, within parA at 1.761 kb on + strand, within parA at 1.769 kb on - strand, within parA at 1.770 kb on + strand, within parA at 1.771 kb on - strand, within parA at 1.820 kb on + strand, within parA at 1.852 kb on + strand, within parA at 1.852 kb on + strand, within parA at 1.878 kb on + strand at 1.878 kb on + strand at 1.888 kb on + strand at 1.913 kb on + strand at 1.921 kb on - strand at 1.923 kb on + strand at 1.923 kb on + strand at 1.923 kb on + strand at 1.924 kb on + strand at 1.931 kb on - strand at 1.931 kb on - strand at 1.935 kb on + strand at 1.935 kb on + strand at 1.935 kb on + strand at 1.935 kb on + strand at 1.936 kb on + strand at 1.936 kb on + strand at 1.936 kb on + strand at 1.936 kb on + strand at 1.936 kb on + strand at 1.936 kb on + strand at 1.936 kb on + strand at 1.943 kb on - strand at 1.943 kb on - strand at 1.944 kb on - strand at 1.944 kb on - strand at 1.944 kb on - strand at 1.944 kb on - strand at 1.944 kb on - strand at 1.960 kb on + strand at 1.968 kb on - strand at 1.972 kb on + strand at 1.973 kb on + strand at 1.979 kb on + strand at 1.979 kb on + strand at 1.979 kb on + strand at 1.980 kb on - strand at 1.981 kb on - strand at 1.987 kb on - strand at 1.999 kb on + strand at 1.999 kb on + strand at 1.999 kb on + strand at 1.999 kb on + strand at 1.999 kb on + strand at 1.999 kb on + strand at 2.005 kb on - strand at 2.005 kb on - strand at 2.007 kb on - strand at 2.007 kb on - strand at 2.007 kb on - strand at 2.007 kb on - strand at 2.007 kb on - strand at 2.007 kb on - strand at 2.007 kb on - strand at 2.024 kb on + strand at 2.024 kb on + strand at 2.024 kb on + strand at 2.037 kb on + strand at 2.058 kb on - strand at 2.311 kb on + strand at 2.331 kb on - strand at 2.332 kb on - strand at 2.334 kb on + strand at 2.357 kb on - strand at 2.359 kb on - strand at 2.364 kb on + strand at 2.371 kb on - strand at 2.378 kb on + strand at 2.378 kb on + strand at 2.378 kb on + strand at 2.379 kb on - strand, within septT2 at 2.386 kb on - strand, within septT2 at 2.386 kb on - strand, within septT2 at 2.386 kb on - strand, within septT2 at 2.407 kb on + strand, within septT2 at 2.407 kb on + strand, within septT2 at 2.407 kb on + strand, within septT2 at 2.407 kb on + strand, within septT2 at 2.415 kb on - strand, within septT2 at 2.417 kb on + strand at 2.433 kb on - strand, within septT2 at 2.444 kb on - strand, within septT2 at 2.446 kb on + strand, within septT2 at 2.446 kb on + strand, within septT2 at 2.451 kb on + strand, within septT2 at 2.454 kb on - strand, within septT2 at 2.454 kb on - strand, within septT2 at 2.455 kb on + strand, within septT2 at 2.459 kb on - strand, within septT2 at 2.461 kb on + strand, within septT2 at 2.469 kb on + strand at 2.494 kb on - strand at 2.494 kb on - strand, within septT2 at 2.494 kb on - strand, within septT2 at 2.494 kb on - strand, within septT2 at 2.514 kb on + strand, within septT2 at 2.519 kb on + strand, within septT2 at 2.569 kb on + strand, within septT2 at 2.569 kb on + strand, within septT2 at 2.569 kb on + strand, within septT2 at 2.569 kb on - strand, within septT2 at 2.571 kb on + strand, within septT2 at 2.571 kb on + strand, within septT2 at 2.577 kb on - strand, within septT2 at 2.581 kb on + strand, within septT2 at 2.589 kb on - strand, within septT2 at 2.593 kb on + strand, within septT2 at 2.616 kb on - strand, within septT2 at 2.618 kb on - strand, within septT2 at 2.633 kb on + strand, within septT2 at 2.642 kb on - strand, within septT2 at 2.662 kb on + strand, within septT2 at 2.664 kb on + strand, within septT2 at 2.670 kb on - strand, within septT2 at 2.671 kb on - strand, within septT2 at 2.672 kb on + strand, within septT2 at 2.672 kb on + strand, within septT2 at 2.672 kb on - strand, within septT2 at 2.672 kb on - strand, within septT2 at 2.672 kb on - strand, within septT2 at 2.672 kb on - strand, within septT2 at 2.672 kb on - strand, within septT2 at 2.680 kb on - strand, within septT2 at 2.680 kb on - strand, within septT2 at 2.680 kb on - strand, within septT2 at 2.688 kb on + strand at 2.689 kb on + strand at 2.697 kb on - strand at 2.697 kb on - strand at 2.697 kb on - strand at 2.697 kb on - strand at 2.698 kb on + strand at 2.699 kb on + strand at 2.699 kb on + strand at 2.699 kb on + strand at 2.707 kb on - strand at 2.707 kb on - strand at 2.707 kb on - strand at 2.739 kb on + strand at 2.739 kb on + strand at 2.740 kb on + strand at 2.740 kb on + strand at 2.741 kb on + strand at 2.748 kb on - strand at 2.783 kb on + strand, within Synpcc7942_B2654 at 2.849 kb on + strand, within Synpcc7942_B2654 at 2.857 kb on - strand, within Synpcc7942_B2654 at 2.857 kb on - strand, within Synpcc7942_B2654 at 2.863 kb on - strand, within Synpcc7942_B2654 at 2.883 kb on + strand, within Synpcc7942_B2654 at 2.887 kb on + strand, within Synpcc7942_B2654 at 2.890 kb on - strand, within Synpcc7942_B2654 at 2.897 kb on + strand, within Synpcc7942_B2654 at 2.913 kb on - strand, within Synpcc7942_B2654 at 2.915 kb on + strand, within Synpcc7942_B2654 at 2.924 kb on + strand, within Synpcc7942_B2654 at 2.924 kb on + strand, within Synpcc7942_B2654
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep1 remove 322 + Synpcc7942_B2615 0.78 +0.8 360 + Synpcc7942_B2615 0.89 -0.1 360 + Synpcc7942_B2615 0.89 +0.4 360 + Synpcc7942_B2615 0.89 -0.8 373 + +0.6 373 + +0.7 373 + +0.6 373 + +1.8 373 + +0.4 373 + +0.6 373 + +0.3 373 + -0.1 373 + +0.5 373 + +0.6 381 - +0.4 381 - +0.7 381 - +0.3 381 - +0.8 381 - +1.1 381 - +1.2 396 + -0.5 401 + +0.2 401 + -0.5 401 + -0.3 401 + -0.9 401 + +2.9 404 - -0.4 404 - +0.1 407 - +0.1 409 - +0.9 409 - -1.0 409 - -0.8 414 - +1.2 414 - +0.0 414 - -0.4 431 + +0.7 495 + -1.0 495 + +0.2 495 + +0.1 495 + -0.3 510 + +0.3 512 + -1.9 514 + +0.5 565 - -1.1 601 - parB Synpcc7942_B2626 0.13 -2.1 651 + parB Synpcc7942_B2626 0.19 -0.6 680 + parB Synpcc7942_B2626 0.22 +0.6 748 + parB Synpcc7942_B2626 0.30 -0.3 756 - parB Synpcc7942_B2626 0.31 +1.2 855 + parB Synpcc7942_B2626 0.43 -1.0 877 - parB Synpcc7942_B2626 0.46 -1.4 1,007 + parB Synpcc7942_B2626 0.62 -0.8 1,192 - parB Synpcc7942_B2626 0.84 +0.5 1,218 + parB Synpcc7942_B2626 0.87 -1.9 1,293 - +0.0 1,293 - -1.0 1,295 + +1.0 1,303 - -1.4 1,340 - +0.4 1,362 - -0.1 1,380 + parA Synpcc7942_B2637 0.10 +0.2 1,380 + parA Synpcc7942_B2637 0.10 -1.3 1,382 - parA Synpcc7942_B2637 0.10 -1.7 1,435 + parA Synpcc7942_B2637 0.19 +0.3 1,473 + parA Synpcc7942_B2637 0.25 -1.8 1,514 + parA Synpcc7942_B2637 0.32 -0.5 1,516 - +0.6 1,567 + parA Synpcc7942_B2637 0.41 +2.2 1,573 - parA Synpcc7942_B2637 0.42 -0.3 1,630 + parA Synpcc7942_B2637 0.51 -1.3 1,643 - parA Synpcc7942_B2637 0.53 -1.1 1,657 - parA Synpcc7942_B2637 0.55 -0.6 1,678 - parA Synpcc7942_B2637 0.59 -1.4 1,691 - parA Synpcc7942_B2637 0.61 -0.6 1,710 - parA Synpcc7942_B2637 0.64 -0.1 1,710 - -0.1 1,756 + parA Synpcc7942_B2637 0.72 +0.1 1,756 + parA Synpcc7942_B2637 0.72 -0.6 1,761 + parA Synpcc7942_B2637 0.72 +0.2 1,769 - parA Synpcc7942_B2637 0.74 -0.4 1,770 + parA Synpcc7942_B2637 0.74 +1.4 1,771 - parA Synpcc7942_B2637 0.74 +1.4 1,820 + parA Synpcc7942_B2637 0.82 +0.3 1,852 + parA Synpcc7942_B2637 0.87 -1.0 1,852 + parA Synpcc7942_B2637 0.87 -0.4 1,878 + +0.0 1,878 + +1.6 1,888 + +0.9 1,913 + +0.4 1,921 - +0.8 1,923 + +0.3 1,923 + +0.9 1,923 + +0.2 1,924 + -0.7 1,931 - -0.0 1,931 - -0.9 1,935 + +0.1 1,935 + -1.4 1,935 + -0.3 1,935 + +0.0 1,936 + -1.6 1,936 + -0.3 1,936 + -1.5 1,936 + +1.2 1,936 + +0.8 1,936 + -0.8 1,936 + -2.4 1,943 - +0.5 1,943 - +0.7 1,944 - -0.1 1,944 - -1.6 1,944 - -2.4 1,944 - +0.6 1,944 - -0.4 1,960 + -0.6 1,968 - -0.0 1,972 + -0.0 1,973 + +1.4 1,979 + -1.0 1,979 + -0.1 1,979 + +0.6 1,980 - +0.1 1,981 - +0.1 1,987 - -0.6 1,999 + -0.0 1,999 + -1.6 1,999 + -1.1 1,999 + +0.3 1,999 + -0.1 1,999 + -0.4 2,005 - +1.3 2,005 - +0.2 2,007 - +0.4 2,007 - -0.0 2,007 - -1.0 2,007 - +0.5 2,007 - -0.8 2,007 - -0.0 2,007 - +0.3 2,024 + -1.3 2,024 + -0.0 2,024 + -0.5 2,037 + -1.0 2,058 - -1.3 2,311 + +1.9 2,331 - -0.7 2,332 - -0.1 2,334 + +0.5 2,357 - -0.7 2,359 - -0.1 2,364 + -0.1 2,371 - +0.3 2,378 + -0.2 2,378 + -0.3 2,378 + +1.0 2,379 - septT2 Synpcc7942_B2659 0.10 +0.5 2,386 - septT2 Synpcc7942_B2659 0.12 +0.6 2,386 - septT2 Synpcc7942_B2659 0.12 +0.4 2,386 - septT2 Synpcc7942_B2659 0.12 -0.1 2,407 + septT2 Synpcc7942_B2659 0.17 +0.4 2,407 + septT2 Synpcc7942_B2659 0.17 -0.8 2,407 + septT2 Synpcc7942_B2659 0.17 -0.7 2,407 + septT2 Synpcc7942_B2659 0.17 -0.4 2,415 - septT2 Synpcc7942_B2659 0.20 +0.4 2,417 + +2.2 2,433 - septT2 Synpcc7942_B2659 0.24 +0.5 2,444 - septT2 Synpcc7942_B2659 0.27 -0.2 2,446 + septT2 Synpcc7942_B2659 0.28 -0.1 2,446 + septT2 Synpcc7942_B2659 0.28 +0.2 2,451 + septT2 Synpcc7942_B2659 0.29 +0.3 2,454 - septT2 Synpcc7942_B2659 0.30 -0.2 2,454 - septT2 Synpcc7942_B2659 0.30 -0.9 2,455 + septT2 Synpcc7942_B2659 0.30 +0.2 2,459 - septT2 Synpcc7942_B2659 0.31 -0.7 2,461 + septT2 Synpcc7942_B2659 0.32 +0.3 2,469 + +2.2 2,494 - +1.0 2,494 - septT2 Synpcc7942_B2659 0.40 +0.1 2,494 - septT2 Synpcc7942_B2659 0.40 +0.2 2,494 - septT2 Synpcc7942_B2659 0.40 +0.4 2,514 + septT2 Synpcc7942_B2659 0.45 -1.0 2,519 + septT2 Synpcc7942_B2659 0.47 -0.1 2,569 + septT2 Synpcc7942_B2659 0.60 +0.6 2,569 + septT2 Synpcc7942_B2659 0.60 +0.4 2,569 + septT2 Synpcc7942_B2659 0.60 +0.3 2,569 - septT2 Synpcc7942_B2659 0.60 -0.1 2,571 + septT2 Synpcc7942_B2659 0.60 +0.2 2,571 + septT2 Synpcc7942_B2659 0.60 -0.7 2,577 - septT2 Synpcc7942_B2659 0.62 +0.9 2,581 + septT2 Synpcc7942_B2659 0.63 +0.6 2,589 - septT2 Synpcc7942_B2659 0.65 -0.3 2,593 + septT2 Synpcc7942_B2659 0.66 -0.9 2,616 - septT2 Synpcc7942_B2659 0.72 +1.0 2,618 - septT2 Synpcc7942_B2659 0.72 +0.8 2,633 + septT2 Synpcc7942_B2659 0.76 -0.2 2,642 - septT2 Synpcc7942_B2659 0.79 +0.2 2,662 + septT2 Synpcc7942_B2659 0.84 -0.5 2,664 + septT2 Synpcc7942_B2659 0.84 -2.9 2,670 - septT2 Synpcc7942_B2659 0.86 -0.2 2,671 - septT2 Synpcc7942_B2659 0.86 +0.0 2,672 + septT2 Synpcc7942_B2659 0.86 +0.7 2,672 + septT2 Synpcc7942_B2659 0.86 +0.3 2,672 - septT2 Synpcc7942_B2659 0.86 -0.4 2,672 - septT2 Synpcc7942_B2659 0.86 +0.1 2,672 - septT2 Synpcc7942_B2659 0.86 -2.0 2,672 - septT2 Synpcc7942_B2659 0.86 -0.6 2,672 - septT2 Synpcc7942_B2659 0.86 -0.5 2,680 - septT2 Synpcc7942_B2659 0.89 -0.7 2,680 - septT2 Synpcc7942_B2659 0.89 -1.3 2,680 - septT2 Synpcc7942_B2659 0.89 +1.8 2,688 + -0.7 2,689 + +0.3 2,697 - -1.0 2,697 - +0.7 2,697 - -0.1 2,697 - -0.1 2,698 + -0.6 2,699 + +0.7 2,699 + +0.4 2,699 + +0.5 2,707 - +0.2 2,707 - -0.4 2,707 - +0.2 2,739 + +0.4 2,739 + -0.8 2,740 + +1.6 2,740 + +0.8 2,741 + +0.3 2,748 - -1.3 2,783 + Synpcc7942_B2654 0.18 +0.1 2,849 + Synpcc7942_B2654 0.37 -0.4 2,857 - Synpcc7942_B2654 0.39 +0.1 2,857 - Synpcc7942_B2654 0.39 -0.1 2,863 - Synpcc7942_B2654 0.41 +0.8 2,883 + Synpcc7942_B2654 0.46 -0.0 2,887 + Synpcc7942_B2654 0.48 -0.8 2,890 - Synpcc7942_B2654 0.48 -1.0 2,897 + Synpcc7942_B2654 0.50 -0.1 2,913 - Synpcc7942_B2654 0.55 +0.4 2,915 + Synpcc7942_B2654 0.56 +0.4 2,924 + Synpcc7942_B2654 0.58 +0.0 2,924 + Synpcc7942_B2654 0.58 +0.1
Or see this region's nucleotide sequence