Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_B2637

Experiment: Light Dark first sampling rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_B2615 and parB are separated by 102 nucleotidesparB and parA overlap by 4 nucleotidesparA and sepA2 are separated by 133 nucleotidessepA2 and septT2 are separated by 10 nucleotidesseptT2 and Synpcc7942_B2654 overlap by 4 nucleotides Synpcc7942_B2615: Synpcc7942_B2615 - hypothetical protein, at 65 to 394 _B2615 Synpcc7942_B2626: parB - hypothetical protein, at 497 to 1,321 parB Synpcc7942_B2637: parA - ParA-like protein, at 1,318 to 1,929 parA Synpcc7942_B2648: sepA2 - hypothetical protein, at 2,063 to 2,329 sepA2 Synpcc7942_B2659: septT2 - nucleic acid-binding protein,contains PIN domain, at 2,340 to 2,723 septT2 Synpcc7942_B2654: Synpcc7942_B2654 - hypothetical protein, at 2,720 to 3,070 _B2654 Position (kb) 1 2Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 0.322 kb on + strand, within Synpcc7942_B2615at 0.360 kb on + strand, within Synpcc7942_B2615at 0.360 kb on + strand, within Synpcc7942_B2615at 0.360 kb on + strand, within Synpcc7942_B2615at 0.373 kb on + strandat 0.373 kb on + strandat 0.373 kb on + strandat 0.373 kb on + strandat 0.373 kb on + strandat 0.373 kb on + strandat 0.373 kb on + strandat 0.373 kb on + strandat 0.373 kb on + strandat 0.373 kb on + strandat 0.381 kb on - strandat 0.381 kb on - strandat 0.381 kb on - strandat 0.381 kb on - strandat 0.381 kb on - strandat 0.381 kb on - strandat 0.396 kb on + strandat 0.401 kb on + strandat 0.401 kb on + strandat 0.401 kb on + strandat 0.401 kb on + strandat 0.401 kb on + strandat 0.404 kb on - strandat 0.404 kb on - strandat 0.407 kb on - strandat 0.409 kb on - strandat 0.409 kb on - strandat 0.409 kb on - strandat 0.414 kb on - strandat 0.414 kb on - strandat 0.414 kb on - strandat 0.431 kb on + strandat 0.495 kb on + strandat 0.495 kb on + strandat 0.495 kb on + strandat 0.495 kb on + strandat 0.510 kb on + strandat 0.512 kb on + strandat 0.514 kb on + strandat 0.565 kb on - strandat 0.601 kb on - strand, within parBat 0.651 kb on + strand, within parBat 0.680 kb on + strand, within parBat 0.748 kb on + strand, within parBat 0.756 kb on - strand, within parBat 0.855 kb on + strand, within parBat 0.877 kb on - strand, within parBat 1.007 kb on + strand, within parBat 1.192 kb on - strand, within parBat 1.218 kb on + strand, within parBat 1.293 kb on - strandat 1.293 kb on - strandat 1.295 kb on + strandat 1.303 kb on - strandat 1.340 kb on - strandat 1.362 kb on - strandat 1.380 kb on + strand, within parAat 1.380 kb on + strand, within parAat 1.382 kb on - strand, within parAat 1.435 kb on + strand, within parAat 1.473 kb on + strand, within parAat 1.514 kb on + strand, within parAat 1.516 kb on - strandat 1.567 kb on + strand, within parAat 1.573 kb on - strand, within parAat 1.630 kb on + strand, within parAat 1.643 kb on - strand, within parAat 1.657 kb on - strand, within parAat 1.678 kb on - strand, within parAat 1.691 kb on - strand, within parAat 1.710 kb on - strand, within parAat 1.710 kb on - strandat 1.756 kb on + strand, within parAat 1.756 kb on + strand, within parAat 1.761 kb on + strand, within parAat 1.769 kb on - strand, within parAat 1.770 kb on + strand, within parAat 1.771 kb on - strand, within parAat 1.820 kb on + strand, within parAat 1.852 kb on + strand, within parAat 1.852 kb on + strand, within parAat 1.878 kb on + strandat 1.878 kb on + strandat 1.888 kb on + strandat 1.913 kb on + strandat 1.921 kb on - strandat 1.923 kb on + strandat 1.923 kb on + strandat 1.923 kb on + strandat 1.924 kb on + strandat 1.931 kb on - strandat 1.931 kb on - strandat 1.935 kb on + strandat 1.935 kb on + strandat 1.935 kb on + strandat 1.935 kb on + strandat 1.936 kb on + strandat 1.936 kb on + strandat 1.936 kb on + strandat 1.936 kb on + strandat 1.936 kb on + strandat 1.936 kb on + strandat 1.936 kb on + strandat 1.943 kb on - strandat 1.943 kb on - strandat 1.944 kb on - strandat 1.944 kb on - strandat 1.944 kb on - strandat 1.944 kb on - strandat 1.944 kb on - strandat 1.960 kb on + strandat 1.968 kb on - strandat 1.972 kb on + strandat 1.973 kb on + strandat 1.979 kb on + strandat 1.979 kb on + strandat 1.979 kb on + strandat 1.980 kb on - strandat 1.981 kb on - strandat 1.987 kb on - strandat 1.999 kb on + strandat 1.999 kb on + strandat 1.999 kb on + strandat 1.999 kb on + strandat 1.999 kb on + strandat 1.999 kb on + strandat 2.005 kb on - strandat 2.005 kb on - strandat 2.007 kb on - strandat 2.007 kb on - strandat 2.007 kb on - strandat 2.007 kb on - strandat 2.007 kb on - strandat 2.007 kb on - strandat 2.007 kb on - strandat 2.024 kb on + strandat 2.024 kb on + strandat 2.024 kb on + strandat 2.037 kb on + strandat 2.058 kb on - strandat 2.311 kb on + strandat 2.331 kb on - strandat 2.332 kb on - strandat 2.334 kb on + strandat 2.357 kb on - strandat 2.359 kb on - strandat 2.364 kb on + strandat 2.371 kb on - strandat 2.378 kb on + strandat 2.378 kb on + strandat 2.378 kb on + strandat 2.379 kb on - strand, within septT2at 2.386 kb on - strand, within septT2at 2.386 kb on - strand, within septT2at 2.386 kb on - strand, within septT2at 2.407 kb on + strand, within septT2at 2.407 kb on + strand, within septT2at 2.407 kb on + strand, within septT2at 2.407 kb on + strand, within septT2at 2.415 kb on - strand, within septT2at 2.417 kb on + strandat 2.433 kb on - strand, within septT2at 2.444 kb on - strand, within septT2at 2.446 kb on + strand, within septT2at 2.446 kb on + strand, within septT2at 2.451 kb on + strand, within septT2at 2.454 kb on - strand, within septT2at 2.454 kb on - strand, within septT2at 2.455 kb on + strand, within septT2at 2.459 kb on - strand, within septT2at 2.461 kb on + strand, within septT2at 2.469 kb on + strandat 2.494 kb on - strandat 2.494 kb on - strand, within septT2at 2.494 kb on - strand, within septT2at 2.494 kb on - strand, within septT2at 2.514 kb on + strand, within septT2at 2.519 kb on + strand, within septT2at 2.569 kb on + strand, within septT2at 2.569 kb on + strand, within septT2at 2.569 kb on + strand, within septT2at 2.569 kb on - strand, within septT2at 2.571 kb on + strand, within septT2at 2.571 kb on + strand, within septT2at 2.577 kb on - strand, within septT2at 2.581 kb on + strand, within septT2at 2.589 kb on - strand, within septT2at 2.593 kb on + strand, within septT2at 2.616 kb on - strand, within septT2at 2.618 kb on - strand, within septT2at 2.633 kb on + strand, within septT2at 2.642 kb on - strand, within septT2at 2.662 kb on + strand, within septT2at 2.664 kb on + strand, within septT2at 2.670 kb on - strand, within septT2at 2.671 kb on - strand, within septT2at 2.672 kb on + strand, within septT2at 2.672 kb on + strand, within septT2at 2.672 kb on - strand, within septT2at 2.672 kb on - strand, within septT2at 2.672 kb on - strand, within septT2at 2.672 kb on - strand, within septT2at 2.672 kb on - strand, within septT2at 2.680 kb on - strand, within septT2at 2.680 kb on - strand, within septT2at 2.680 kb on - strand, within septT2at 2.688 kb on + strandat 2.689 kb on + strandat 2.697 kb on - strandat 2.697 kb on - strandat 2.697 kb on - strandat 2.697 kb on - strandat 2.698 kb on + strandat 2.699 kb on + strandat 2.699 kb on + strandat 2.699 kb on + strandat 2.707 kb on - strandat 2.707 kb on - strandat 2.707 kb on - strandat 2.739 kb on + strandat 2.739 kb on + strandat 2.740 kb on + strandat 2.740 kb on + strandat 2.741 kb on + strandat 2.748 kb on - strandat 2.783 kb on + strand, within Synpcc7942_B2654at 2.849 kb on + strand, within Synpcc7942_B2654at 2.857 kb on - strand, within Synpcc7942_B2654at 2.857 kb on - strand, within Synpcc7942_B2654at 2.863 kb on - strand, within Synpcc7942_B2654at 2.883 kb on + strand, within Synpcc7942_B2654at 2.887 kb on + strand, within Synpcc7942_B2654at 2.890 kb on - strand, within Synpcc7942_B2654at 2.897 kb on + strand, within Synpcc7942_B2654at 2.913 kb on - strand, within Synpcc7942_B2654at 2.915 kb on + strand, within Synpcc7942_B2654at 2.924 kb on + strand, within Synpcc7942_B2654at 2.924 kb on + strand, within Synpcc7942_B2654

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Per-strain Table

Position Strand Gene LocusTag Fraction Light Dark first sampling rep1
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322 + Synpcc7942_B2615 0.78 +0.8
360 + Synpcc7942_B2615 0.89 -0.1
360 + Synpcc7942_B2615 0.89 +0.4
360 + Synpcc7942_B2615 0.89 -0.8
373 + +0.6
373 + +0.7
373 + +0.6
373 + +1.8
373 + +0.4
373 + +0.6
373 + +0.3
373 + -0.1
373 + +0.5
373 + +0.6
381 - +0.4
381 - +0.7
381 - +0.3
381 - +0.8
381 - +1.1
381 - +1.2
396 + -0.5
401 + +0.2
401 + -0.5
401 + -0.3
401 + -0.9
401 + +2.9
404 - -0.4
404 - +0.1
407 - +0.1
409 - +0.9
409 - -1.0
409 - -0.8
414 - +1.2
414 - +0.0
414 - -0.4
431 + +0.7
495 + -1.0
495 + +0.2
495 + +0.1
495 + -0.3
510 + +0.3
512 + -1.9
514 + +0.5
565 - -1.1
601 - parB Synpcc7942_B2626 0.13 -2.1
651 + parB Synpcc7942_B2626 0.19 -0.6
680 + parB Synpcc7942_B2626 0.22 +0.6
748 + parB Synpcc7942_B2626 0.30 -0.3
756 - parB Synpcc7942_B2626 0.31 +1.2
855 + parB Synpcc7942_B2626 0.43 -1.0
877 - parB Synpcc7942_B2626 0.46 -1.4
1,007 + parB Synpcc7942_B2626 0.62 -0.8
1,192 - parB Synpcc7942_B2626 0.84 +0.5
1,218 + parB Synpcc7942_B2626 0.87 -1.9
1,293 - +0.0
1,293 - -1.0
1,295 + +1.0
1,303 - -1.4
1,340 - +0.4
1,362 - -0.1
1,380 + parA Synpcc7942_B2637 0.10 +0.2
1,380 + parA Synpcc7942_B2637 0.10 -1.3
1,382 - parA Synpcc7942_B2637 0.10 -1.7
1,435 + parA Synpcc7942_B2637 0.19 +0.3
1,473 + parA Synpcc7942_B2637 0.25 -1.8
1,514 + parA Synpcc7942_B2637 0.32 -0.5
1,516 - +0.6
1,567 + parA Synpcc7942_B2637 0.41 +2.2
1,573 - parA Synpcc7942_B2637 0.42 -0.3
1,630 + parA Synpcc7942_B2637 0.51 -1.3
1,643 - parA Synpcc7942_B2637 0.53 -1.1
1,657 - parA Synpcc7942_B2637 0.55 -0.6
1,678 - parA Synpcc7942_B2637 0.59 -1.4
1,691 - parA Synpcc7942_B2637 0.61 -0.6
1,710 - parA Synpcc7942_B2637 0.64 -0.1
1,710 - -0.1
1,756 + parA Synpcc7942_B2637 0.72 +0.1
1,756 + parA Synpcc7942_B2637 0.72 -0.6
1,761 + parA Synpcc7942_B2637 0.72 +0.2
1,769 - parA Synpcc7942_B2637 0.74 -0.4
1,770 + parA Synpcc7942_B2637 0.74 +1.4
1,771 - parA Synpcc7942_B2637 0.74 +1.4
1,820 + parA Synpcc7942_B2637 0.82 +0.3
1,852 + parA Synpcc7942_B2637 0.87 -1.0
1,852 + parA Synpcc7942_B2637 0.87 -0.4
1,878 + +0.0
1,878 + +1.6
1,888 + +0.9
1,913 + +0.4
1,921 - +0.8
1,923 + +0.3
1,923 + +0.9
1,923 + +0.2
1,924 + -0.7
1,931 - -0.0
1,931 - -0.9
1,935 + +0.1
1,935 + -1.4
1,935 + -0.3
1,935 + +0.0
1,936 + -1.6
1,936 + -0.3
1,936 + -1.5
1,936 + +1.2
1,936 + +0.8
1,936 + -0.8
1,936 + -2.4
1,943 - +0.5
1,943 - +0.7
1,944 - -0.1
1,944 - -1.6
1,944 - -2.4
1,944 - +0.6
1,944 - -0.4
1,960 + -0.6
1,968 - -0.0
1,972 + -0.0
1,973 + +1.4
1,979 + -1.0
1,979 + -0.1
1,979 + +0.6
1,980 - +0.1
1,981 - +0.1
1,987 - -0.6
1,999 + -0.0
1,999 + -1.6
1,999 + -1.1
1,999 + +0.3
1,999 + -0.1
1,999 + -0.4
2,005 - +1.3
2,005 - +0.2
2,007 - +0.4
2,007 - -0.0
2,007 - -1.0
2,007 - +0.5
2,007 - -0.8
2,007 - -0.0
2,007 - +0.3
2,024 + -1.3
2,024 + -0.0
2,024 + -0.5
2,037 + -1.0
2,058 - -1.3
2,311 + +1.9
2,331 - -0.7
2,332 - -0.1
2,334 + +0.5
2,357 - -0.7
2,359 - -0.1
2,364 + -0.1
2,371 - +0.3
2,378 + -0.2
2,378 + -0.3
2,378 + +1.0
2,379 - septT2 Synpcc7942_B2659 0.10 +0.5
2,386 - septT2 Synpcc7942_B2659 0.12 +0.6
2,386 - septT2 Synpcc7942_B2659 0.12 +0.4
2,386 - septT2 Synpcc7942_B2659 0.12 -0.1
2,407 + septT2 Synpcc7942_B2659 0.17 +0.4
2,407 + septT2 Synpcc7942_B2659 0.17 -0.8
2,407 + septT2 Synpcc7942_B2659 0.17 -0.7
2,407 + septT2 Synpcc7942_B2659 0.17 -0.4
2,415 - septT2 Synpcc7942_B2659 0.20 +0.4
2,417 + +2.2
2,433 - septT2 Synpcc7942_B2659 0.24 +0.5
2,444 - septT2 Synpcc7942_B2659 0.27 -0.2
2,446 + septT2 Synpcc7942_B2659 0.28 -0.1
2,446 + septT2 Synpcc7942_B2659 0.28 +0.2
2,451 + septT2 Synpcc7942_B2659 0.29 +0.3
2,454 - septT2 Synpcc7942_B2659 0.30 -0.2
2,454 - septT2 Synpcc7942_B2659 0.30 -0.9
2,455 + septT2 Synpcc7942_B2659 0.30 +0.2
2,459 - septT2 Synpcc7942_B2659 0.31 -0.7
2,461 + septT2 Synpcc7942_B2659 0.32 +0.3
2,469 + +2.2
2,494 - +1.0
2,494 - septT2 Synpcc7942_B2659 0.40 +0.1
2,494 - septT2 Synpcc7942_B2659 0.40 +0.2
2,494 - septT2 Synpcc7942_B2659 0.40 +0.4
2,514 + septT2 Synpcc7942_B2659 0.45 -1.0
2,519 + septT2 Synpcc7942_B2659 0.47 -0.1
2,569 + septT2 Synpcc7942_B2659 0.60 +0.6
2,569 + septT2 Synpcc7942_B2659 0.60 +0.4
2,569 + septT2 Synpcc7942_B2659 0.60 +0.3
2,569 - septT2 Synpcc7942_B2659 0.60 -0.1
2,571 + septT2 Synpcc7942_B2659 0.60 +0.2
2,571 + septT2 Synpcc7942_B2659 0.60 -0.7
2,577 - septT2 Synpcc7942_B2659 0.62 +0.9
2,581 + septT2 Synpcc7942_B2659 0.63 +0.6
2,589 - septT2 Synpcc7942_B2659 0.65 -0.3
2,593 + septT2 Synpcc7942_B2659 0.66 -0.9
2,616 - septT2 Synpcc7942_B2659 0.72 +1.0
2,618 - septT2 Synpcc7942_B2659 0.72 +0.8
2,633 + septT2 Synpcc7942_B2659 0.76 -0.2
2,642 - septT2 Synpcc7942_B2659 0.79 +0.2
2,662 + septT2 Synpcc7942_B2659 0.84 -0.5
2,664 + septT2 Synpcc7942_B2659 0.84 -2.9
2,670 - septT2 Synpcc7942_B2659 0.86 -0.2
2,671 - septT2 Synpcc7942_B2659 0.86 +0.0
2,672 + septT2 Synpcc7942_B2659 0.86 +0.7
2,672 + septT2 Synpcc7942_B2659 0.86 +0.3
2,672 - septT2 Synpcc7942_B2659 0.86 -0.4
2,672 - septT2 Synpcc7942_B2659 0.86 +0.1
2,672 - septT2 Synpcc7942_B2659 0.86 -2.0
2,672 - septT2 Synpcc7942_B2659 0.86 -0.6
2,672 - septT2 Synpcc7942_B2659 0.86 -0.5
2,680 - septT2 Synpcc7942_B2659 0.89 -0.7
2,680 - septT2 Synpcc7942_B2659 0.89 -1.3
2,680 - septT2 Synpcc7942_B2659 0.89 +1.8
2,688 + -0.7
2,689 + +0.3
2,697 - -1.0
2,697 - +0.7
2,697 - -0.1
2,697 - -0.1
2,698 + -0.6
2,699 + +0.7
2,699 + +0.4
2,699 + +0.5
2,707 - +0.2
2,707 - -0.4
2,707 - +0.2
2,739 + +0.4
2,739 + -0.8
2,740 + +1.6
2,740 + +0.8
2,741 + +0.3
2,748 - -1.3
2,783 + Synpcc7942_B2654 0.18 +0.1
2,849 + Synpcc7942_B2654 0.37 -0.4
2,857 - Synpcc7942_B2654 0.39 +0.1
2,857 - Synpcc7942_B2654 0.39 -0.1
2,863 - Synpcc7942_B2654 0.41 +0.8
2,883 + Synpcc7942_B2654 0.46 -0.0
2,887 + Synpcc7942_B2654 0.48 -0.8
2,890 - Synpcc7942_B2654 0.48 -1.0
2,897 + Synpcc7942_B2654 0.50 -0.1
2,913 - Synpcc7942_B2654 0.55 +0.4
2,915 + Synpcc7942_B2654 0.56 +0.4
2,924 + Synpcc7942_B2654 0.58 +0.0
2,924 + Synpcc7942_B2654 0.58 +0.1

Or see this region's nucleotide sequence