Experiment: Light Dark first sampling rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt por and Synpcc7942_2504 are separated by 207 nucleotides Synpcc7942_2504 and Synpcc7942_2505 are separated by 57 nucleotides Synpcc7942_2505 and par are separated by 12 nucleotides
Synpcc7942_2503: por - protochlorophyllide oxidoreductase, at 2,584,495 to 2,585,460
por
Synpcc7942_2504: Synpcc7942_2504 - hypothetical protein, at 2,585,668 to 2,586,072
_2504
Synpcc7942_2505: Synpcc7942_2505 - Caffeoyl-CoA O-methyltransferase, at 2,586,130 to 2,586,786
_2505
Synpcc7942_2506: par - phosphoadenosine phosphosulfate reductase, at 2,586,799 to 2,587,497
par
Position (kb)
2585
2586
2587 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2585.471 kb on + strand at 2585.473 kb on + strand at 2585.481 kb on - strand at 2585.481 kb on - strand at 2585.507 kb on + strand at 2585.509 kb on + strand at 2585.536 kb on + strand at 2585.552 kb on + strand at 2585.609 kb on + strand at 2585.617 kb on - strand at 2585.634 kb on - strand at 2585.666 kb on + strand at 2585.672 kb on + strand at 2585.674 kb on - strand at 2585.683 kb on + strand at 2585.683 kb on + strand at 2585.683 kb on + strand at 2585.691 kb on - strand at 2585.691 kb on - strand at 2585.706 kb on - strand at 2585.735 kb on - strand, within Synpcc7942_2504 at 2585.739 kb on + strand, within Synpcc7942_2504 at 2585.754 kb on - strand, within Synpcc7942_2504 at 2585.792 kb on + strand, within Synpcc7942_2504 at 2585.792 kb on + strand, within Synpcc7942_2504 at 2585.800 kb on - strand, within Synpcc7942_2504 at 2585.800 kb on - strand, within Synpcc7942_2504 at 2585.868 kb on + strand, within Synpcc7942_2504 at 2585.930 kb on + strand, within Synpcc7942_2504 at 2585.945 kb on + strand, within Synpcc7942_2504 at 2585.945 kb on + strand, within Synpcc7942_2504 at 2585.945 kb on + strand, within Synpcc7942_2504 at 2585.946 kb on - strand, within Synpcc7942_2504 at 2586.010 kb on + strand, within Synpcc7942_2504 at 2586.015 kb on + strand, within Synpcc7942_2504 at 2586.023 kb on - strand, within Synpcc7942_2504 at 2586.024 kb on - strand, within Synpcc7942_2504 at 2586.074 kb on + strand at 2586.098 kb on + strand at 2586.244 kb on + strand, within Synpcc7942_2505 at 2586.249 kb on + strand, within Synpcc7942_2505 at 2586.257 kb on - strand, within Synpcc7942_2505 at 2586.297 kb on + strand, within Synpcc7942_2505 at 2586.297 kb on + strand, within Synpcc7942_2505 at 2586.306 kb on + strand, within Synpcc7942_2505 at 2586.316 kb on - strand, within Synpcc7942_2505 at 2586.325 kb on - strand, within Synpcc7942_2505 at 2586.325 kb on - strand, within Synpcc7942_2505 at 2586.325 kb on - strand, within Synpcc7942_2505 at 2586.327 kb on + strand, within Synpcc7942_2505 at 2586.339 kb on + strand, within Synpcc7942_2505 at 2586.342 kb on - strand, within Synpcc7942_2505 at 2586.372 kb on + strand, within Synpcc7942_2505 at 2586.416 kb on + strand, within Synpcc7942_2505 at 2586.452 kb on + strand, within Synpcc7942_2505 at 2586.460 kb on - strand, within Synpcc7942_2505 at 2586.472 kb on - strand, within Synpcc7942_2505 at 2586.497 kb on + strand, within Synpcc7942_2505 at 2586.497 kb on + strand, within Synpcc7942_2505 at 2586.517 kb on - strand, within Synpcc7942_2505 at 2586.576 kb on + strand, within Synpcc7942_2505 at 2586.576 kb on + strand, within Synpcc7942_2505 at 2586.633 kb on + strand, within Synpcc7942_2505 at 2586.633 kb on + strand, within Synpcc7942_2505 at 2586.641 kb on - strand, within Synpcc7942_2505 at 2586.641 kb on - strand, within Synpcc7942_2505 at 2586.641 kb on - strand, within Synpcc7942_2505 at 2586.646 kb on - strand, within Synpcc7942_2505 at 2586.646 kb on - strand, within Synpcc7942_2505 at 2586.680 kb on + strand, within Synpcc7942_2505 at 2586.680 kb on + strand, within Synpcc7942_2505 at 2586.688 kb on - strand, within Synpcc7942_2505 at 2586.737 kb on + strand at 2586.740 kb on - strand at 2586.756 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep1 remove 2,585,471 + -0.2 2,585,473 + -3.0 2,585,481 - +0.3 2,585,481 - +0.6 2,585,507 + +0.5 2,585,509 + +0.5 2,585,536 + -0.0 2,585,552 + -0.2 2,585,609 + +0.9 2,585,617 - -1.1 2,585,634 - -1.1 2,585,666 + -0.4 2,585,672 + +0.1 2,585,674 - -0.3 2,585,683 + -0.3 2,585,683 + +1.6 2,585,683 + +1.0 2,585,691 - -0.5 2,585,691 - -0.4 2,585,706 - +0.0 2,585,735 - Synpcc7942_2504 0.17 -2.3 2,585,739 + Synpcc7942_2504 0.18 -1.5 2,585,754 - Synpcc7942_2504 0.21 -0.7 2,585,792 + Synpcc7942_2504 0.31 -1.2 2,585,792 + Synpcc7942_2504 0.31 -0.3 2,585,800 - Synpcc7942_2504 0.33 +0.3 2,585,800 - Synpcc7942_2504 0.33 -1.1 2,585,868 + Synpcc7942_2504 0.49 -0.9 2,585,930 + Synpcc7942_2504 0.65 -1.5 2,585,945 + Synpcc7942_2504 0.68 -1.0 2,585,945 + Synpcc7942_2504 0.68 -2.4 2,585,945 + Synpcc7942_2504 0.68 -1.4 2,585,946 - Synpcc7942_2504 0.69 -1.7 2,586,010 + Synpcc7942_2504 0.84 -1.5 2,586,015 + Synpcc7942_2504 0.86 -1.7 2,586,023 - Synpcc7942_2504 0.88 -1.4 2,586,024 - Synpcc7942_2504 0.88 +1.2 2,586,074 + +0.2 2,586,098 + -0.9 2,586,244 + Synpcc7942_2505 0.17 -0.2 2,586,249 + Synpcc7942_2505 0.18 -0.6 2,586,257 - Synpcc7942_2505 0.19 -0.0 2,586,297 + Synpcc7942_2505 0.25 -0.2 2,586,297 + Synpcc7942_2505 0.25 -0.4 2,586,306 + Synpcc7942_2505 0.27 -0.3 2,586,316 - Synpcc7942_2505 0.28 -1.5 2,586,325 - Synpcc7942_2505 0.30 +0.4 2,586,325 - Synpcc7942_2505 0.30 -1.5 2,586,325 - Synpcc7942_2505 0.30 -1.1 2,586,327 + Synpcc7942_2505 0.30 -1.3 2,586,339 + Synpcc7942_2505 0.32 -0.1 2,586,342 - Synpcc7942_2505 0.32 -0.9 2,586,372 + Synpcc7942_2505 0.37 -1.1 2,586,416 + Synpcc7942_2505 0.44 +0.2 2,586,452 + Synpcc7942_2505 0.49 +0.7 2,586,460 - Synpcc7942_2505 0.50 -0.0 2,586,472 - Synpcc7942_2505 0.52 -0.8 2,586,497 + Synpcc7942_2505 0.56 +0.3 2,586,497 + Synpcc7942_2505 0.56 -1.2 2,586,517 - Synpcc7942_2505 0.59 +1.3 2,586,576 + Synpcc7942_2505 0.68 +0.3 2,586,576 + Synpcc7942_2505 0.68 +0.5 2,586,633 + Synpcc7942_2505 0.77 -0.0 2,586,633 + Synpcc7942_2505 0.77 -1.2 2,586,641 - Synpcc7942_2505 0.78 +0.4 2,586,641 - Synpcc7942_2505 0.78 -0.1 2,586,641 - Synpcc7942_2505 0.78 +0.0 2,586,646 - Synpcc7942_2505 0.79 -0.8 2,586,646 - Synpcc7942_2505 0.79 -1.3 2,586,680 + Synpcc7942_2505 0.84 +0.1 2,586,680 + Synpcc7942_2505 0.84 -0.1 2,586,688 - Synpcc7942_2505 0.85 +1.0 2,586,737 + +0.4 2,586,740 - -0.8 2,586,756 + +1.0
Or see this region's nucleotide sequence