Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2226

Experiment: Light Dark first sampling rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrplN and rpsQ are separated by 11 nucleotidesrpsQ and rpl29 are separated by 34 nucleotidesrpl29 and rplP are separated by 2 nucleotidesrplP and rpsC are separated by 8 nucleotidesrpsC and rplV are separated by 24 nucleotidesrplV and rpsS are separated by 18 nucleotidesrpsS and rplB are separated by 31 nucleotides Synpcc7942_2222: rplN - 50S ribosomal protein L14, at 2,294,280 to 2,294,645 rplN Synpcc7942_2223: rpsQ - 30S ribosomal protein S17, at 2,294,657 to 2,294,905 rpsQ Synpcc7942_2224: rpl29 - 50S ribosomal protein L29, at 2,294,940 to 2,295,134 rpl29 Synpcc7942_2225: rplP - 50S ribosomal protein L16, at 2,295,137 to 2,295,565 rplP Synpcc7942_2226: rpsC - 30S ribosomal protein S3, at 2,295,574 to 2,296,308 rpsC Synpcc7942_2227: rplV - 50S ribosomal protein L22, at 2,296,333 to 2,296,686 rplV Synpcc7942_2228: rpsS - 30S ribosomal protein S19, at 2,296,705 to 2,296,980 rpsS Synpcc7942_2229: rplB - 50S ribosomal protein L2, at 2,297,012 to 2,297,875 rplB Position (kb) 2295 2296 2297Strain fitness (log2 ratio) -1 0 1at 2296.322 kb on + strandat 2296.982 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Light Dark first sampling rep1
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2,296,322 + -1.4
2,296,982 + -0.8

Or see this region's nucleotide sequence