Experiment: Light Dark first sampling rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_1555 and Synpcc7942_1556 are separated by 121 nucleotides Synpcc7942_1556 and rpoD6 are separated by 15 nucleotides rpoD6 and Synpcc7942_1558 are separated by 807 nucleotides
Synpcc7942_1555: Synpcc7942_1555 - Thf1-like protein, at 1,611,906 to 1,612,748
_1555
Synpcc7942_1556: Synpcc7942_1556 - hypothetical protein, at 1,612,870 to 1,613,448
_1556
Synpcc7942_1557: rpoD6 - principal RNA polymerase sigma factor SigA, at 1,613,464 to 1,614,396
rpoD6
Synpcc7942_1558: Synpcc7942_1558 - hypothetical protein, at 1,615,204 to 1,616,271
_1558
Position (kb)
1613
1614
1615 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1612.475 kb on + strand, within Synpcc7942_1555 at 1612.483 kb on - strand, within Synpcc7942_1555 at 1612.600 kb on + strand, within Synpcc7942_1555 at 1612.628 kb on + strand, within Synpcc7942_1555 at 1612.633 kb on + strand, within Synpcc7942_1555 at 1612.641 kb on - strand, within Synpcc7942_1555 at 1612.717 kb on - strand at 1612.748 kb on - strand at 1612.753 kb on - strand at 1612.757 kb on - strand at 1612.788 kb on + strand at 1612.788 kb on + strand at 1612.788 kb on + strand at 1612.796 kb on - strand at 1612.811 kb on - strand at 1612.840 kb on - strand at 1612.899 kb on - strand at 1612.912 kb on - strand at 1612.916 kb on + strand at 1612.916 kb on + strand at 1612.917 kb on - strand at 1612.921 kb on + strand at 1612.923 kb on - strand at 1612.924 kb on - strand at 1612.926 kb on + strand at 1612.932 kb on + strand, within Synpcc7942_1556 at 1612.934 kb on - strand, within Synpcc7942_1556 at 1612.934 kb on - strand, within Synpcc7942_1556 at 1612.935 kb on - strand, within Synpcc7942_1556 at 1612.940 kb on - strand, within Synpcc7942_1556 at 1612.950 kb on - strand, within Synpcc7942_1556 at 1612.957 kb on - strand, within Synpcc7942_1556 at 1613.004 kb on + strand, within Synpcc7942_1556 at 1613.057 kb on + strand, within Synpcc7942_1556 at 1613.067 kb on + strand, within Synpcc7942_1556 at 1613.070 kb on - strand, within Synpcc7942_1556 at 1613.075 kb on - strand, within Synpcc7942_1556 at 1613.079 kb on + strand, within Synpcc7942_1556 at 1613.124 kb on + strand, within Synpcc7942_1556 at 1613.127 kb on + strand, within Synpcc7942_1556 at 1613.132 kb on + strand, within Synpcc7942_1556 at 1613.193 kb on - strand, within Synpcc7942_1556 at 1613.193 kb on - strand, within Synpcc7942_1556 at 1613.215 kb on + strand, within Synpcc7942_1556 at 1613.253 kb on + strand at 1613.265 kb on + strand, within Synpcc7942_1556 at 1613.275 kb on - strand, within Synpcc7942_1556 at 1613.376 kb on + strand, within Synpcc7942_1556 at 1613.384 kb on - strand, within Synpcc7942_1556 at 1613.385 kb on - strand, within Synpcc7942_1556 at 1613.399 kb on + strand at 1613.428 kb on + strand at 1613.455 kb on - strand at 1613.455 kb on - strand at 1613.518 kb on + strand at 1613.548 kb on + strand at 1613.577 kb on + strand, within rpoD6 at 1613.578 kb on + strand, within rpoD6 at 1613.586 kb on - strand, within rpoD6 at 1613.586 kb on - strand, within rpoD6 at 1613.586 kb on - strand, within rpoD6 at 1613.604 kb on - strand, within rpoD6 at 1613.637 kb on - strand, within rpoD6 at 1613.657 kb on + strand, within rpoD6 at 1613.657 kb on + strand, within rpoD6 at 1613.754 kb on + strand, within rpoD6 at 1613.762 kb on - strand, within rpoD6 at 1613.780 kb on - strand, within rpoD6 at 1613.818 kb on + strand, within rpoD6 at 1613.830 kb on + strand, within rpoD6 at 1613.943 kb on + strand, within rpoD6 at 1613.951 kb on - strand, within rpoD6 at 1613.961 kb on - strand, within rpoD6 at 1613.981 kb on - strand, within rpoD6 at 1613.996 kb on - strand, within rpoD6 at 1614.026 kb on + strand, within rpoD6 at 1614.104 kb on - strand, within rpoD6 at 1614.112 kb on - strand, within rpoD6 at 1614.165 kb on - strand, within rpoD6 at 1614.283 kb on - strand, within rpoD6 at 1614.315 kb on + strand at 1614.552 kb on - strand at 1614.607 kb on + strand at 1614.607 kb on + strand at 1614.699 kb on + strand at 1614.925 kb on - strand at 1614.928 kb on + strand at 1614.928 kb on + strand at 1614.936 kb on + strand at 1614.936 kb on - strand at 1614.936 kb on - strand at 1614.976 kb on - strand at 1614.997 kb on + strand at 1615.081 kb on + strand at 1615.085 kb on - strand at 1615.085 kb on - strand at 1615.180 kb on + strand at 1615.188 kb on - strand at 1615.188 kb on - strand at 1615.214 kb on - strand at 1615.216 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep1 remove 1,612,475 + Synpcc7942_1555 0.67 -0.7 1,612,483 - Synpcc7942_1555 0.68 +0.1 1,612,600 + Synpcc7942_1555 0.82 +0.3 1,612,628 + Synpcc7942_1555 0.86 +0.0 1,612,633 + Synpcc7942_1555 0.86 -0.2 1,612,641 - Synpcc7942_1555 0.87 -0.8 1,612,717 - -0.2 1,612,748 - +0.3 1,612,753 - -0.3 1,612,757 - -0.7 1,612,788 + +1.7 1,612,788 + +1.3 1,612,788 + +0.4 1,612,796 - -0.6 1,612,811 - -1.0 1,612,840 - -0.7 1,612,899 - -0.9 1,612,912 - -0.3 1,612,916 + -0.4 1,612,916 + -0.3 1,612,917 - +0.2 1,612,921 + +1.2 1,612,923 - +0.1 1,612,924 - -1.5 1,612,926 + -0.4 1,612,932 + Synpcc7942_1556 0.11 +0.0 1,612,934 - Synpcc7942_1556 0.11 +0.4 1,612,934 - Synpcc7942_1556 0.11 -0.2 1,612,935 - Synpcc7942_1556 0.11 -0.4 1,612,940 - Synpcc7942_1556 0.12 -0.5 1,612,950 - Synpcc7942_1556 0.14 +0.5 1,612,957 - Synpcc7942_1556 0.15 +0.2 1,613,004 + Synpcc7942_1556 0.23 -0.5 1,613,057 + Synpcc7942_1556 0.32 -1.5 1,613,067 + Synpcc7942_1556 0.34 +0.7 1,613,070 - Synpcc7942_1556 0.35 -2.2 1,613,075 - Synpcc7942_1556 0.35 -0.0 1,613,079 + Synpcc7942_1556 0.36 -0.3 1,613,124 + Synpcc7942_1556 0.44 +0.7 1,613,127 + Synpcc7942_1556 0.44 +0.1 1,613,132 + Synpcc7942_1556 0.45 -0.3 1,613,193 - Synpcc7942_1556 0.56 +0.4 1,613,193 - Synpcc7942_1556 0.56 -0.9 1,613,215 + Synpcc7942_1556 0.60 +0.6 1,613,253 + -1.2 1,613,265 + Synpcc7942_1556 0.68 -0.3 1,613,275 - Synpcc7942_1556 0.70 +0.3 1,613,376 + Synpcc7942_1556 0.87 -1.7 1,613,384 - Synpcc7942_1556 0.89 -0.5 1,613,385 - Synpcc7942_1556 0.89 -0.3 1,613,399 + +0.5 1,613,428 + +0.1 1,613,455 - -0.0 1,613,455 - -1.9 1,613,518 + -0.7 1,613,548 + -0.7 1,613,577 + rpoD6 Synpcc7942_1557 0.12 -0.4 1,613,578 + rpoD6 Synpcc7942_1557 0.12 -2.0 1,613,586 - rpoD6 Synpcc7942_1557 0.13 -1.2 1,613,586 - rpoD6 Synpcc7942_1557 0.13 -0.3 1,613,586 - rpoD6 Synpcc7942_1557 0.13 -0.2 1,613,604 - rpoD6 Synpcc7942_1557 0.15 -0.3 1,613,637 - rpoD6 Synpcc7942_1557 0.19 -0.5 1,613,657 + rpoD6 Synpcc7942_1557 0.21 +0.1 1,613,657 + rpoD6 Synpcc7942_1557 0.21 -0.3 1,613,754 + rpoD6 Synpcc7942_1557 0.31 -1.2 1,613,762 - rpoD6 Synpcc7942_1557 0.32 +0.1 1,613,780 - rpoD6 Synpcc7942_1557 0.34 -1.8 1,613,818 + rpoD6 Synpcc7942_1557 0.38 -2.7 1,613,830 + rpoD6 Synpcc7942_1557 0.39 +1.2 1,613,943 + rpoD6 Synpcc7942_1557 0.51 -1.5 1,613,951 - rpoD6 Synpcc7942_1557 0.52 -1.5 1,613,961 - rpoD6 Synpcc7942_1557 0.53 -0.3 1,613,981 - rpoD6 Synpcc7942_1557 0.55 -1.7 1,613,996 - rpoD6 Synpcc7942_1557 0.57 -2.0 1,614,026 + rpoD6 Synpcc7942_1557 0.60 -2.7 1,614,104 - rpoD6 Synpcc7942_1557 0.69 +0.1 1,614,112 - rpoD6 Synpcc7942_1557 0.69 -0.8 1,614,165 - rpoD6 Synpcc7942_1557 0.75 -1.8 1,614,283 - rpoD6 Synpcc7942_1557 0.88 +0.1 1,614,315 + -3.7 1,614,552 - +0.3 1,614,607 + -2.2 1,614,607 + -0.1 1,614,699 + -0.1 1,614,925 - -0.2 1,614,928 + -1.9 1,614,928 + -0.9 1,614,936 + +0.1 1,614,936 - +0.9 1,614,936 - +0.1 1,614,976 - -1.0 1,614,997 + -0.2 1,615,081 + +0.1 1,615,085 - +0.7 1,615,085 - -0.1 1,615,180 + +1.3 1,615,188 - -0.5 1,615,188 - +0.1 1,615,214 - -0.8 1,615,216 - -0.1
Or see this region's nucleotide sequence