Experiment: Light Dark first sampling rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cmpC and cmpD are separated by 24 nucleotides cmpD and Synpcc7942_1492 are separated by 252 nucleotides Synpcc7942_1492 and mazG are separated by 6 nucleotides
Synpcc7942_1490: cmpC - nitrate transport ATP-binding subunits C and D, at 1,540,818 to 1,542,809
cmpC
Synpcc7942_1491: cmpD - nitrate transport ATP-binding subunits C and D, at 1,542,834 to 1,543,670
cmpD
Synpcc7942_1492: Synpcc7942_1492 - hypothetical protein, at 1,543,923 to 1,544,507
_1492
Synpcc7942_1493: mazG - nucleoside triphosphate pyrophosphohydrolase, at 1,544,514 to 1,545,353
mazG
Position (kb)
1542
1543
1544 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1541.874 kb on + strand, within cmpC at 1541.874 kb on + strand, within cmpC at 1541.880 kb on - strand, within cmpC at 1541.920 kb on + strand, within cmpC at 1541.928 kb on - strand, within cmpC at 1541.928 kb on - strand, within cmpC at 1541.928 kb on - strand, within cmpC at 1541.928 kb on - strand, within cmpC at 1541.930 kb on + strand, within cmpC at 1541.930 kb on + strand, within cmpC at 1541.930 kb on + strand, within cmpC at 1541.930 kb on + strand, within cmpC at 1541.930 kb on + strand, within cmpC at 1541.932 kb on + strand, within cmpC at 1541.938 kb on - strand, within cmpC at 1541.938 kb on - strand, within cmpC at 1541.938 kb on - strand, within cmpC at 1541.938 kb on - strand, within cmpC at 1541.953 kb on + strand, within cmpC at 1541.998 kb on - strand, within cmpC at 1542.019 kb on - strand, within cmpC at 1542.031 kb on - strand, within cmpC at 1542.064 kb on - strand, within cmpC at 1542.099 kb on + strand, within cmpC at 1542.099 kb on + strand, within cmpC at 1542.113 kb on + strand, within cmpC at 1542.148 kb on - strand at 1542.177 kb on - strand, within cmpC at 1542.177 kb on - strand, within cmpC at 1542.179 kb on + strand, within cmpC at 1542.179 kb on + strand, within cmpC at 1542.179 kb on + strand, within cmpC at 1542.179 kb on + strand, within cmpC at 1542.179 kb on + strand, within cmpC at 1542.179 kb on + strand, within cmpC at 1542.179 kb on + strand, within cmpC at 1542.187 kb on - strand, within cmpC at 1542.187 kb on - strand, within cmpC at 1542.187 kb on - strand, within cmpC at 1542.187 kb on - strand, within cmpC at 1542.187 kb on - strand, within cmpC at 1542.282 kb on - strand, within cmpC at 1542.315 kb on + strand, within cmpC at 1542.320 kb on + strand, within cmpC at 1542.328 kb on - strand, within cmpC at 1542.328 kb on - strand, within cmpC at 1542.328 kb on - strand, within cmpC at 1542.328 kb on - strand, within cmpC at 1542.332 kb on + strand, within cmpC at 1542.341 kb on - strand, within cmpC at 1542.350 kb on - strand, within cmpC at 1542.378 kb on - strand, within cmpC at 1542.387 kb on + strand, within cmpC at 1542.387 kb on + strand, within cmpC at 1542.395 kb on - strand, within cmpC at 1542.395 kb on - strand, within cmpC at 1542.397 kb on - strand, within cmpC at 1542.405 kb on + strand, within cmpC at 1542.405 kb on + strand, within cmpC at 1542.410 kb on + strand, within cmpC at 1542.415 kb on + strand, within cmpC at 1542.415 kb on + strand, within cmpC at 1542.415 kb on + strand, within cmpC at 1542.422 kb on + strand, within cmpC at 1542.423 kb on + strand, within cmpC at 1542.423 kb on - strand, within cmpC at 1542.424 kb on + strand, within cmpC at 1542.450 kb on + strand, within cmpC at 1542.489 kb on - strand, within cmpC at 1542.500 kb on - strand, within cmpC at 1542.500 kb on - strand, within cmpC at 1542.511 kb on + strand, within cmpC at 1542.516 kb on + strand, within cmpC at 1542.546 kb on + strand, within cmpC at 1542.555 kb on + strand, within cmpC at 1542.604 kb on - strand, within cmpC at 1542.612 kb on - strand at 1542.614 kb on + strand at 1542.614 kb on + strand at 1542.671 kb on - strand at 1542.686 kb on + strand at 1542.686 kb on + strand at 1542.694 kb on - strand at 1542.704 kb on - strand at 1542.717 kb on - strand at 1542.736 kb on - strand at 1542.754 kb on + strand at 1542.823 kb on + strand at 1542.824 kb on - strand at 1542.938 kb on + strand, within cmpD at 1542.938 kb on + strand, within cmpD at 1542.946 kb on - strand, within cmpD at 1542.948 kb on + strand, within cmpD at 1542.948 kb on + strand, within cmpD at 1542.964 kb on + strand, within cmpD at 1542.980 kb on - strand, within cmpD at 1542.980 kb on - strand, within cmpD at 1543.037 kb on - strand, within cmpD at 1543.037 kb on - strand, within cmpD at 1543.053 kb on + strand, within cmpD at 1543.062 kb on + strand, within cmpD at 1543.085 kb on + strand at 1543.087 kb on - strand, within cmpD at 1543.094 kb on - strand, within cmpD at 1543.094 kb on - strand, within cmpD at 1543.153 kb on + strand, within cmpD at 1543.208 kb on - strand, within cmpD at 1543.245 kb on + strand, within cmpD at 1543.292 kb on + strand, within cmpD at 1543.300 kb on - strand, within cmpD at 1543.303 kb on + strand, within cmpD at 1543.442 kb on + strand, within cmpD at 1543.452 kb on + strand, within cmpD at 1543.452 kb on + strand, within cmpD at 1543.490 kb on - strand, within cmpD at 1543.559 kb on - strand, within cmpD at 1543.561 kb on + strand, within cmpD at 1543.586 kb on + strand, within cmpD at 1543.594 kb on - strand at 1543.604 kb on + strand at 1543.604 kb on + strand at 1543.606 kb on + strand at 1543.606 kb on + strand at 1543.606 kb on + strand at 1543.606 kb on + strand at 1543.612 kb on - strand at 1543.614 kb on - strand at 1543.614 kb on - strand at 1543.667 kb on - strand at 1543.670 kb on + strand at 1543.682 kb on + strand at 1543.688 kb on + strand at 1543.791 kb on + strand at 1543.791 kb on + strand at 1543.792 kb on - strand at 1543.792 kb on - strand at 1543.799 kb on - strand at 1543.799 kb on - strand at 1543.814 kb on + strand at 1543.861 kb on + strand at 1543.869 kb on - strand at 1543.879 kb on - strand at 1543.917 kb on + strand at 1543.925 kb on - strand at 1544.035 kb on - strand, within Synpcc7942_1492 at 1544.067 kb on - strand, within Synpcc7942_1492 at 1544.072 kb on + strand, within Synpcc7942_1492 at 1544.120 kb on - strand, within Synpcc7942_1492 at 1544.132 kb on + strand, within Synpcc7942_1492 at 1544.140 kb on - strand, within Synpcc7942_1492 at 1544.140 kb on - strand, within Synpcc7942_1492 at 1544.150 kb on - strand, within Synpcc7942_1492 at 1544.163 kb on - strand, within Synpcc7942_1492 at 1544.211 kb on + strand, within Synpcc7942_1492 at 1544.211 kb on + strand, within Synpcc7942_1492 at 1544.211 kb on + strand, within Synpcc7942_1492 at 1544.211 kb on + strand, within Synpcc7942_1492 at 1544.269 kb on + strand, within Synpcc7942_1492 at 1544.279 kb on + strand, within Synpcc7942_1492 at 1544.295 kb on + strand, within Synpcc7942_1492 at 1544.295 kb on + strand, within Synpcc7942_1492 at 1544.298 kb on - strand, within Synpcc7942_1492 at 1544.303 kb on - strand, within Synpcc7942_1492 at 1544.310 kb on - strand, within Synpcc7942_1492 at 1544.329 kb on + strand, within Synpcc7942_1492 at 1544.335 kb on + strand, within Synpcc7942_1492 at 1544.338 kb on - strand, within Synpcc7942_1492 at 1544.340 kb on + strand, within Synpcc7942_1492 at 1544.340 kb on + strand, within Synpcc7942_1492 at 1544.340 kb on + strand, within Synpcc7942_1492 at 1544.347 kb on + strand, within Synpcc7942_1492 at 1544.348 kb on - strand, within Synpcc7942_1492 at 1544.348 kb on - strand, within Synpcc7942_1492 at 1544.348 kb on - strand, within Synpcc7942_1492 at 1544.373 kb on + strand, within Synpcc7942_1492 at 1544.391 kb on - strand, within Synpcc7942_1492 at 1544.405 kb on - strand, within Synpcc7942_1492 at 1544.433 kb on + strand at 1544.457 kb on + strand at 1544.465 kb on - strand at 1544.542 kb on - strand at 1544.583 kb on - strand at 1544.598 kb on - strand, within mazG at 1544.603 kb on + strand, within mazG at 1544.616 kb on + strand, within mazG at 1544.624 kb on - strand, within mazG at 1544.628 kb on + strand, within mazG at 1544.634 kb on - strand, within mazG at 1544.636 kb on - strand, within mazG
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep1 remove 1,541,874 + cmpC Synpcc7942_1490 0.53 +0.3 1,541,874 + cmpC Synpcc7942_1490 0.53 +0.4 1,541,880 - cmpC Synpcc7942_1490 0.53 -0.8 1,541,920 + cmpC Synpcc7942_1490 0.55 +0.5 1,541,928 - cmpC Synpcc7942_1490 0.56 -1.3 1,541,928 - cmpC Synpcc7942_1490 0.56 -0.9 1,541,928 - cmpC Synpcc7942_1490 0.56 -0.3 1,541,928 - cmpC Synpcc7942_1490 0.56 -1.5 1,541,930 + cmpC Synpcc7942_1490 0.56 -0.2 1,541,930 + cmpC Synpcc7942_1490 0.56 +0.3 1,541,930 + cmpC Synpcc7942_1490 0.56 -0.5 1,541,930 + cmpC Synpcc7942_1490 0.56 -1.0 1,541,930 + cmpC Synpcc7942_1490 0.56 +0.1 1,541,932 + cmpC Synpcc7942_1490 0.56 -1.2 1,541,938 - cmpC Synpcc7942_1490 0.56 -1.0 1,541,938 - cmpC Synpcc7942_1490 0.56 -0.6 1,541,938 - cmpC Synpcc7942_1490 0.56 -1.0 1,541,938 - cmpC Synpcc7942_1490 0.56 -1.6 1,541,953 + cmpC Synpcc7942_1490 0.57 -0.8 1,541,998 - cmpC Synpcc7942_1490 0.59 +0.3 1,542,019 - cmpC Synpcc7942_1490 0.60 -0.3 1,542,031 - cmpC Synpcc7942_1490 0.61 -0.7 1,542,064 - cmpC Synpcc7942_1490 0.63 +0.4 1,542,099 + cmpC Synpcc7942_1490 0.64 -1.4 1,542,099 + cmpC Synpcc7942_1490 0.64 -0.3 1,542,113 + cmpC Synpcc7942_1490 0.65 -1.4 1,542,148 - -0.1 1,542,177 - cmpC Synpcc7942_1490 0.68 -0.2 1,542,177 - cmpC Synpcc7942_1490 0.68 +0.7 1,542,179 + cmpC Synpcc7942_1490 0.68 -0.6 1,542,179 + cmpC Synpcc7942_1490 0.68 -1.7 1,542,179 + cmpC Synpcc7942_1490 0.68 -1.3 1,542,179 + cmpC Synpcc7942_1490 0.68 -2.8 1,542,179 + cmpC Synpcc7942_1490 0.68 -0.7 1,542,179 + cmpC Synpcc7942_1490 0.68 -0.9 1,542,179 + cmpC Synpcc7942_1490 0.68 -1.0 1,542,187 - cmpC Synpcc7942_1490 0.69 -1.6 1,542,187 - cmpC Synpcc7942_1490 0.69 +0.2 1,542,187 - cmpC Synpcc7942_1490 0.69 -0.9 1,542,187 - cmpC Synpcc7942_1490 0.69 -1.3 1,542,187 - cmpC Synpcc7942_1490 0.69 -1.5 1,542,282 - cmpC Synpcc7942_1490 0.73 +0.7 1,542,315 + cmpC Synpcc7942_1490 0.75 -0.1 1,542,320 + cmpC Synpcc7942_1490 0.75 +0.1 1,542,328 - cmpC Synpcc7942_1490 0.76 -0.6 1,542,328 - cmpC Synpcc7942_1490 0.76 -1.0 1,542,328 - cmpC Synpcc7942_1490 0.76 -0.5 1,542,328 - cmpC Synpcc7942_1490 0.76 -0.2 1,542,332 + cmpC Synpcc7942_1490 0.76 -1.1 1,542,341 - cmpC Synpcc7942_1490 0.76 -0.3 1,542,350 - cmpC Synpcc7942_1490 0.77 -0.5 1,542,378 - cmpC Synpcc7942_1490 0.78 -0.9 1,542,387 + cmpC Synpcc7942_1490 0.79 -2.0 1,542,387 + cmpC Synpcc7942_1490 0.79 -0.6 1,542,395 - cmpC Synpcc7942_1490 0.79 -0.6 1,542,395 - cmpC Synpcc7942_1490 0.79 +0.1 1,542,397 - cmpC Synpcc7942_1490 0.79 -0.9 1,542,405 + cmpC Synpcc7942_1490 0.80 -0.9 1,542,405 + cmpC Synpcc7942_1490 0.80 +0.6 1,542,410 + cmpC Synpcc7942_1490 0.80 -0.0 1,542,415 + cmpC Synpcc7942_1490 0.80 -1.2 1,542,415 + cmpC Synpcc7942_1490 0.80 -0.9 1,542,415 + cmpC Synpcc7942_1490 0.80 -1.6 1,542,422 + cmpC Synpcc7942_1490 0.81 -2.2 1,542,423 + cmpC Synpcc7942_1490 0.81 -1.0 1,542,423 - cmpC Synpcc7942_1490 0.81 -0.0 1,542,424 + cmpC Synpcc7942_1490 0.81 -1.2 1,542,450 + cmpC Synpcc7942_1490 0.82 -0.6 1,542,489 - cmpC Synpcc7942_1490 0.84 -0.8 1,542,500 - cmpC Synpcc7942_1490 0.84 +0.7 1,542,500 - cmpC Synpcc7942_1490 0.84 -1.3 1,542,511 + cmpC Synpcc7942_1490 0.85 -0.7 1,542,516 + cmpC Synpcc7942_1490 0.85 -0.2 1,542,546 + cmpC Synpcc7942_1490 0.87 -1.6 1,542,555 + cmpC Synpcc7942_1490 0.87 -1.4 1,542,604 - cmpC Synpcc7942_1490 0.90 +0.1 1,542,612 - -1.9 1,542,614 + -0.1 1,542,614 + -0.3 1,542,671 - -2.2 1,542,686 + -1.0 1,542,686 + -0.1 1,542,694 - -1.1 1,542,704 - +0.3 1,542,717 - -0.5 1,542,736 - -1.8 1,542,754 + -1.2 1,542,823 + -0.7 1,542,824 - +0.7 1,542,938 + cmpD Synpcc7942_1491 0.12 -0.7 1,542,938 + cmpD Synpcc7942_1491 0.12 -1.4 1,542,946 - cmpD Synpcc7942_1491 0.13 -1.1 1,542,948 + cmpD Synpcc7942_1491 0.14 -1.5 1,542,948 + cmpD Synpcc7942_1491 0.14 -1.2 1,542,964 + cmpD Synpcc7942_1491 0.16 -1.3 1,542,980 - cmpD Synpcc7942_1491 0.17 -0.5 1,542,980 - cmpD Synpcc7942_1491 0.17 -1.3 1,543,037 - cmpD Synpcc7942_1491 0.24 -0.7 1,543,037 - cmpD Synpcc7942_1491 0.24 -0.9 1,543,053 + cmpD Synpcc7942_1491 0.26 -1.2 1,543,062 + cmpD Synpcc7942_1491 0.27 -0.7 1,543,085 + -0.8 1,543,087 - cmpD Synpcc7942_1491 0.30 -1.9 1,543,094 - cmpD Synpcc7942_1491 0.31 +0.2 1,543,094 - cmpD Synpcc7942_1491 0.31 -1.7 1,543,153 + cmpD Synpcc7942_1491 0.38 -0.3 1,543,208 - cmpD Synpcc7942_1491 0.45 -1.3 1,543,245 + cmpD Synpcc7942_1491 0.49 -0.3 1,543,292 + cmpD Synpcc7942_1491 0.55 -1.5 1,543,300 - cmpD Synpcc7942_1491 0.56 -1.2 1,543,303 + cmpD Synpcc7942_1491 0.56 -0.9 1,543,442 + cmpD Synpcc7942_1491 0.73 -1.1 1,543,452 + cmpD Synpcc7942_1491 0.74 -1.0 1,543,452 + cmpD Synpcc7942_1491 0.74 -1.7 1,543,490 - cmpD Synpcc7942_1491 0.78 -2.7 1,543,559 - cmpD Synpcc7942_1491 0.87 +0.2 1,543,561 + cmpD Synpcc7942_1491 0.87 -0.5 1,543,586 + cmpD Synpcc7942_1491 0.90 -1.2 1,543,594 - -1.5 1,543,604 + +1.2 1,543,604 + -2.5 1,543,606 + -0.6 1,543,606 + -1.3 1,543,606 + -2.3 1,543,606 + -1.5 1,543,612 - -1.8 1,543,614 - -0.3 1,543,614 - -2.6 1,543,667 - +0.3 1,543,670 + +2.4 1,543,682 + -0.8 1,543,688 + -0.8 1,543,791 + +0.7 1,543,791 + -0.3 1,543,792 - +0.4 1,543,792 - -0.9 1,543,799 - +0.5 1,543,799 - +0.3 1,543,814 + +0.9 1,543,861 + +0.8 1,543,869 - -0.9 1,543,879 - +1.4 1,543,917 + +0.8 1,543,925 - +0.4 1,544,035 - Synpcc7942_1492 0.19 -0.3 1,544,067 - Synpcc7942_1492 0.25 -0.2 1,544,072 + Synpcc7942_1492 0.25 -0.9 1,544,120 - Synpcc7942_1492 0.34 -0.6 1,544,132 + Synpcc7942_1492 0.36 -1.3 1,544,140 - Synpcc7942_1492 0.37 -0.7 1,544,140 - Synpcc7942_1492 0.37 -0.0 1,544,150 - Synpcc7942_1492 0.39 -0.7 1,544,163 - Synpcc7942_1492 0.41 -0.3 1,544,211 + Synpcc7942_1492 0.49 -1.3 1,544,211 + Synpcc7942_1492 0.49 +0.4 1,544,211 + Synpcc7942_1492 0.49 +0.1 1,544,211 + Synpcc7942_1492 0.49 -0.1 1,544,269 + Synpcc7942_1492 0.59 -0.4 1,544,279 + Synpcc7942_1492 0.61 -0.9 1,544,295 + Synpcc7942_1492 0.64 +0.1 1,544,295 + Synpcc7942_1492 0.64 -0.6 1,544,298 - Synpcc7942_1492 0.64 +0.3 1,544,303 - Synpcc7942_1492 0.65 -0.7 1,544,310 - Synpcc7942_1492 0.66 -0.3 1,544,329 + Synpcc7942_1492 0.69 -1.5 1,544,335 + Synpcc7942_1492 0.70 -0.9 1,544,338 - Synpcc7942_1492 0.71 +0.1 1,544,340 + Synpcc7942_1492 0.71 -0.6 1,544,340 + Synpcc7942_1492 0.71 -0.5 1,544,340 + Synpcc7942_1492 0.71 +0.1 1,544,347 + Synpcc7942_1492 0.72 +0.0 1,544,348 - Synpcc7942_1492 0.73 -1.8 1,544,348 - Synpcc7942_1492 0.73 +2.0 1,544,348 - Synpcc7942_1492 0.73 -0.8 1,544,373 + Synpcc7942_1492 0.77 -0.8 1,544,391 - Synpcc7942_1492 0.80 -1.8 1,544,405 - Synpcc7942_1492 0.82 -1.7 1,544,433 + -0.9 1,544,457 + -1.2 1,544,465 - -0.2 1,544,542 - -0.9 1,544,583 - +1.4 1,544,598 - mazG Synpcc7942_1493 0.10 +0.6 1,544,603 + mazG Synpcc7942_1493 0.11 +0.4 1,544,616 + mazG Synpcc7942_1493 0.12 +0.1 1,544,624 - mazG Synpcc7942_1493 0.13 -0.2 1,544,628 + mazG Synpcc7942_1493 0.14 -0.0 1,544,634 - mazG Synpcc7942_1493 0.14 +0.3 1,544,636 - mazG Synpcc7942_1493 0.15 -0.1
Or see this region's nucleotide sequence