Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1476

Experiment: Light Dark first sampling rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsbtA and Synpcc7942_1476 are separated by 762 nucleotidesSynpcc7942_1476 and Synpcc7942_1477 are separated by 110 nucleotides Synpcc7942_1475: sbtA - sodium-dependent bicarbonate transporter, at 1,525,833 to 1,526,954 sbtA Synpcc7942_1476: Synpcc7942_1476 - hypothetical protein, at 1,527,717 to 1,528,031 _1476 Synpcc7942_1477: Synpcc7942_1477 - hypothetical protein, at 1,528,142 to 1,530,337 _1477 Position (kb) 1527 1528 1529Strain fitness (log2 ratio) -3 -2 -1 0 1at 1526.737 kb on + strand, within sbtAat 1527.134 kb on + strandat 1527.383 kb on - strandat 1527.383 kb on - strandat 1527.395 kb on + strandat 1527.428 kb on - strandat 1527.438 kb on - strandat 1527.438 kb on - strandat 1527.438 kb on - strandat 1527.438 kb on - strandat 1527.463 kb on + strandat 1527.528 kb on - strandat 1527.534 kb on + strandat 1527.592 kb on + strandat 1527.610 kb on + strandat 1527.626 kb on + strandat 1527.746 kb on - strandat 1527.806 kb on + strand, within Synpcc7942_1476at 1527.807 kb on + strand, within Synpcc7942_1476at 1527.814 kb on - strand, within Synpcc7942_1476at 1527.814 kb on - strand, within Synpcc7942_1476at 1527.826 kb on - strand, within Synpcc7942_1476at 1527.849 kb on - strand, within Synpcc7942_1476at 1527.856 kb on + strand, within Synpcc7942_1476at 1527.856 kb on + strand, within Synpcc7942_1476at 1527.881 kb on + strand, within Synpcc7942_1476at 1527.992 kb on - strand, within Synpcc7942_1476at 1527.999 kb on + strand, within Synpcc7942_1476at 1528.016 kb on - strandat 1528.046 kb on + strandat 1528.054 kb on - strandat 1528.054 kb on - strandat 1528.061 kb on - strandat 1528.083 kb on - strandat 1528.112 kb on - strandat 1528.114 kb on + strandat 1528.117 kb on - strandat 1528.122 kb on - strandat 1528.141 kb on - strandat 1528.146 kb on - strandat 1528.193 kb on + strandat 1528.201 kb on - strandat 1528.201 kb on - strandat 1528.253 kb on + strandat 1528.261 kb on - strandat 1528.312 kb on + strandat 1528.325 kb on - strandat 1528.331 kb on + strandat 1528.399 kb on + strand, within Synpcc7942_1477at 1528.400 kb on + strand, within Synpcc7942_1477at 1528.407 kb on - strand, within Synpcc7942_1477at 1528.425 kb on + strand, within Synpcc7942_1477at 1528.433 kb on - strand, within Synpcc7942_1477at 1528.497 kb on - strand, within Synpcc7942_1477at 1528.502 kb on - strand, within Synpcc7942_1477at 1528.532 kb on - strand, within Synpcc7942_1477at 1528.581 kb on + strand, within Synpcc7942_1477at 1528.599 kb on - strand, within Synpcc7942_1477at 1528.621 kb on + strand, within Synpcc7942_1477at 1528.627 kb on - strand, within Synpcc7942_1477at 1528.629 kb on - strand, within Synpcc7942_1477at 1528.629 kb on - strand, within Synpcc7942_1477at 1528.629 kb on - strand, within Synpcc7942_1477at 1528.631 kb on + strand, within Synpcc7942_1477at 1528.639 kb on - strand, within Synpcc7942_1477at 1528.641 kb on - strand, within Synpcc7942_1477at 1528.659 kb on - strand, within Synpcc7942_1477at 1528.740 kb on + strand, within Synpcc7942_1477at 1528.742 kb on + strand, within Synpcc7942_1477at 1528.748 kb on - strand, within Synpcc7942_1477at 1528.748 kb on - strand, within Synpcc7942_1477at 1528.751 kb on + strand, within Synpcc7942_1477at 1528.759 kb on - strand, within Synpcc7942_1477at 1528.759 kb on - strand, within Synpcc7942_1477at 1528.761 kb on - strand, within Synpcc7942_1477at 1528.771 kb on - strand, within Synpcc7942_1477at 1528.791 kb on - strand, within Synpcc7942_1477at 1528.810 kb on + strand, within Synpcc7942_1477at 1528.826 kb on + strand, within Synpcc7942_1477at 1528.859 kb on - strand, within Synpcc7942_1477at 1528.909 kb on + strand, within Synpcc7942_1477at 1528.943 kb on - strand, within Synpcc7942_1477at 1528.944 kb on - strand, within Synpcc7942_1477at 1528.944 kb on - strand, within Synpcc7942_1477at 1528.947 kb on + strand, within Synpcc7942_1477at 1528.954 kb on + strand, within Synpcc7942_1477at 1528.955 kb on - strand, within Synpcc7942_1477at 1528.955 kb on - strand, within Synpcc7942_1477at 1528.959 kb on + strand, within Synpcc7942_1477at 1528.975 kb on + strand, within Synpcc7942_1477at 1528.979 kb on + strand, within Synpcc7942_1477at 1529.004 kb on - strand, within Synpcc7942_1477at 1529.018 kb on + strand, within Synpcc7942_1477

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Per-strain Table

Position Strand Gene LocusTag Fraction Light Dark first sampling rep1
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1,526,737 + sbtA Synpcc7942_1475 0.81 +1.4
1,527,134 + -1.4
1,527,383 - +1.5
1,527,383 - -2.0
1,527,395 + -0.2
1,527,428 - -1.6
1,527,438 - -0.9
1,527,438 - -1.7
1,527,438 - -1.3
1,527,438 - -2.0
1,527,463 + -0.4
1,527,528 - -2.0
1,527,534 + +0.0
1,527,592 + -0.0
1,527,610 + -0.7
1,527,626 + +0.5
1,527,746 - -1.5
1,527,806 + Synpcc7942_1476 0.28 -0.8
1,527,807 + Synpcc7942_1476 0.29 -1.9
1,527,814 - Synpcc7942_1476 0.31 -2.3
1,527,814 - Synpcc7942_1476 0.31 -3.1
1,527,826 - Synpcc7942_1476 0.35 -0.7
1,527,849 - Synpcc7942_1476 0.42 -1.5
1,527,856 + Synpcc7942_1476 0.44 -0.3
1,527,856 + Synpcc7942_1476 0.44 -2.6
1,527,881 + Synpcc7942_1476 0.52 -0.7
1,527,992 - Synpcc7942_1476 0.87 +1.7
1,527,999 + Synpcc7942_1476 0.90 -2.5
1,528,016 - -1.1
1,528,046 + -1.3
1,528,054 - -0.2
1,528,054 - -1.2
1,528,061 - -2.0
1,528,083 - -0.9
1,528,112 - -1.9
1,528,114 + -0.3
1,528,117 - -0.3
1,528,122 - -1.4
1,528,141 - +0.1
1,528,146 - -0.0
1,528,193 + -0.6
1,528,201 - -0.9
1,528,201 - -0.5
1,528,253 + +0.5
1,528,261 - -0.5
1,528,312 + -0.3
1,528,325 - -1.0
1,528,331 + +0.6
1,528,399 + Synpcc7942_1477 0.12 +0.8
1,528,400 + Synpcc7942_1477 0.12 -2.6
1,528,407 - Synpcc7942_1477 0.12 -1.2
1,528,425 + Synpcc7942_1477 0.13 -0.5
1,528,433 - Synpcc7942_1477 0.13 +0.3
1,528,497 - Synpcc7942_1477 0.16 +0.6
1,528,502 - Synpcc7942_1477 0.16 -0.3
1,528,532 - Synpcc7942_1477 0.18 -0.8
1,528,581 + Synpcc7942_1477 0.20 +1.3
1,528,599 - Synpcc7942_1477 0.21 +0.3
1,528,621 + Synpcc7942_1477 0.22 -0.1
1,528,627 - Synpcc7942_1477 0.22 -0.0
1,528,629 - Synpcc7942_1477 0.22 +0.3
1,528,629 - Synpcc7942_1477 0.22 -0.0
1,528,629 - Synpcc7942_1477 0.22 -1.8
1,528,631 + Synpcc7942_1477 0.22 -0.3
1,528,639 - Synpcc7942_1477 0.23 +1.4
1,528,641 - Synpcc7942_1477 0.23 +1.5
1,528,659 - Synpcc7942_1477 0.24 -0.2
1,528,740 + Synpcc7942_1477 0.27 -1.7
1,528,742 + Synpcc7942_1477 0.27 +0.1
1,528,748 - Synpcc7942_1477 0.28 +0.5
1,528,748 - Synpcc7942_1477 0.28 -1.2
1,528,751 + Synpcc7942_1477 0.28 +0.6
1,528,759 - Synpcc7942_1477 0.28 -0.7
1,528,759 - Synpcc7942_1477 0.28 -2.5
1,528,761 - Synpcc7942_1477 0.28 -0.6
1,528,771 - Synpcc7942_1477 0.29 -1.3
1,528,791 - Synpcc7942_1477 0.30 +0.1
1,528,810 + Synpcc7942_1477 0.30 -0.4
1,528,826 + Synpcc7942_1477 0.31 -2.2
1,528,859 - Synpcc7942_1477 0.33 -0.4
1,528,909 + Synpcc7942_1477 0.35 +0.3
1,528,943 - Synpcc7942_1477 0.36 +0.0
1,528,944 - Synpcc7942_1477 0.37 +0.7
1,528,944 - Synpcc7942_1477 0.37 -0.7
1,528,947 + Synpcc7942_1477 0.37 +0.5
1,528,954 + Synpcc7942_1477 0.37 -0.5
1,528,955 - Synpcc7942_1477 0.37 +0.5
1,528,955 - Synpcc7942_1477 0.37 -0.2
1,528,959 + Synpcc7942_1477 0.37 +1.1
1,528,975 + Synpcc7942_1477 0.38 +1.2
1,528,979 + Synpcc7942_1477 0.38 -0.8
1,529,004 - Synpcc7942_1477 0.39 -0.7
1,529,018 + Synpcc7942_1477 0.40 +0.3

Or see this region's nucleotide sequence