Experiment: Light Dark first sampling rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sbtA and Synpcc7942_1476 are separated by 762 nucleotides Synpcc7942_1476 and Synpcc7942_1477 are separated by 110 nucleotides
Synpcc7942_1475: sbtA - sodium-dependent bicarbonate transporter, at 1,525,833 to 1,526,954
sbtA
Synpcc7942_1476: Synpcc7942_1476 - hypothetical protein, at 1,527,717 to 1,528,031
_1476
Synpcc7942_1477: Synpcc7942_1477 - hypothetical protein, at 1,528,142 to 1,530,337
_1477
Position (kb)
1527
1528
1529 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1526.737 kb on + strand, within sbtA at 1527.134 kb on + strand at 1527.383 kb on - strand at 1527.383 kb on - strand at 1527.395 kb on + strand at 1527.428 kb on - strand at 1527.438 kb on - strand at 1527.438 kb on - strand at 1527.438 kb on - strand at 1527.438 kb on - strand at 1527.463 kb on + strand at 1527.528 kb on - strand at 1527.534 kb on + strand at 1527.592 kb on + strand at 1527.610 kb on + strand at 1527.626 kb on + strand at 1527.746 kb on - strand at 1527.806 kb on + strand, within Synpcc7942_1476 at 1527.807 kb on + strand, within Synpcc7942_1476 at 1527.814 kb on - strand, within Synpcc7942_1476 at 1527.814 kb on - strand, within Synpcc7942_1476 at 1527.826 kb on - strand, within Synpcc7942_1476 at 1527.849 kb on - strand, within Synpcc7942_1476 at 1527.856 kb on + strand, within Synpcc7942_1476 at 1527.856 kb on + strand, within Synpcc7942_1476 at 1527.881 kb on + strand, within Synpcc7942_1476 at 1527.992 kb on - strand, within Synpcc7942_1476 at 1527.999 kb on + strand, within Synpcc7942_1476 at 1528.016 kb on - strand at 1528.046 kb on + strand at 1528.054 kb on - strand at 1528.054 kb on - strand at 1528.061 kb on - strand at 1528.083 kb on - strand at 1528.112 kb on - strand at 1528.114 kb on + strand at 1528.117 kb on - strand at 1528.122 kb on - strand at 1528.141 kb on - strand at 1528.146 kb on - strand at 1528.193 kb on + strand at 1528.201 kb on - strand at 1528.201 kb on - strand at 1528.253 kb on + strand at 1528.261 kb on - strand at 1528.312 kb on + strand at 1528.325 kb on - strand at 1528.331 kb on + strand at 1528.399 kb on + strand, within Synpcc7942_1477 at 1528.400 kb on + strand, within Synpcc7942_1477 at 1528.407 kb on - strand, within Synpcc7942_1477 at 1528.425 kb on + strand, within Synpcc7942_1477 at 1528.433 kb on - strand, within Synpcc7942_1477 at 1528.497 kb on - strand, within Synpcc7942_1477 at 1528.502 kb on - strand, within Synpcc7942_1477 at 1528.532 kb on - strand, within Synpcc7942_1477 at 1528.581 kb on + strand, within Synpcc7942_1477 at 1528.599 kb on - strand, within Synpcc7942_1477 at 1528.621 kb on + strand, within Synpcc7942_1477 at 1528.627 kb on - strand, within Synpcc7942_1477 at 1528.629 kb on - strand, within Synpcc7942_1477 at 1528.629 kb on - strand, within Synpcc7942_1477 at 1528.629 kb on - strand, within Synpcc7942_1477 at 1528.631 kb on + strand, within Synpcc7942_1477 at 1528.639 kb on - strand, within Synpcc7942_1477 at 1528.641 kb on - strand, within Synpcc7942_1477 at 1528.659 kb on - strand, within Synpcc7942_1477 at 1528.740 kb on + strand, within Synpcc7942_1477 at 1528.742 kb on + strand, within Synpcc7942_1477 at 1528.748 kb on - strand, within Synpcc7942_1477 at 1528.748 kb on - strand, within Synpcc7942_1477 at 1528.751 kb on + strand, within Synpcc7942_1477 at 1528.759 kb on - strand, within Synpcc7942_1477 at 1528.759 kb on - strand, within Synpcc7942_1477 at 1528.761 kb on - strand, within Synpcc7942_1477 at 1528.771 kb on - strand, within Synpcc7942_1477 at 1528.791 kb on - strand, within Synpcc7942_1477 at 1528.810 kb on + strand, within Synpcc7942_1477 at 1528.826 kb on + strand, within Synpcc7942_1477 at 1528.859 kb on - strand, within Synpcc7942_1477 at 1528.909 kb on + strand, within Synpcc7942_1477 at 1528.943 kb on - strand, within Synpcc7942_1477 at 1528.944 kb on - strand, within Synpcc7942_1477 at 1528.944 kb on - strand, within Synpcc7942_1477 at 1528.947 kb on + strand, within Synpcc7942_1477 at 1528.954 kb on + strand, within Synpcc7942_1477 at 1528.955 kb on - strand, within Synpcc7942_1477 at 1528.955 kb on - strand, within Synpcc7942_1477 at 1528.959 kb on + strand, within Synpcc7942_1477 at 1528.975 kb on + strand, within Synpcc7942_1477 at 1528.979 kb on + strand, within Synpcc7942_1477 at 1529.004 kb on - strand, within Synpcc7942_1477 at 1529.018 kb on + strand, within Synpcc7942_1477
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep1 remove 1,526,737 + sbtA Synpcc7942_1475 0.81 +1.4 1,527,134 + -1.4 1,527,383 - +1.5 1,527,383 - -2.0 1,527,395 + -0.2 1,527,428 - -1.6 1,527,438 - -0.9 1,527,438 - -1.7 1,527,438 - -1.3 1,527,438 - -2.0 1,527,463 + -0.4 1,527,528 - -2.0 1,527,534 + +0.0 1,527,592 + -0.0 1,527,610 + -0.7 1,527,626 + +0.5 1,527,746 - -1.5 1,527,806 + Synpcc7942_1476 0.28 -0.8 1,527,807 + Synpcc7942_1476 0.29 -1.9 1,527,814 - Synpcc7942_1476 0.31 -2.3 1,527,814 - Synpcc7942_1476 0.31 -3.1 1,527,826 - Synpcc7942_1476 0.35 -0.7 1,527,849 - Synpcc7942_1476 0.42 -1.5 1,527,856 + Synpcc7942_1476 0.44 -0.3 1,527,856 + Synpcc7942_1476 0.44 -2.6 1,527,881 + Synpcc7942_1476 0.52 -0.7 1,527,992 - Synpcc7942_1476 0.87 +1.7 1,527,999 + Synpcc7942_1476 0.90 -2.5 1,528,016 - -1.1 1,528,046 + -1.3 1,528,054 - -0.2 1,528,054 - -1.2 1,528,061 - -2.0 1,528,083 - -0.9 1,528,112 - -1.9 1,528,114 + -0.3 1,528,117 - -0.3 1,528,122 - -1.4 1,528,141 - +0.1 1,528,146 - -0.0 1,528,193 + -0.6 1,528,201 - -0.9 1,528,201 - -0.5 1,528,253 + +0.5 1,528,261 - -0.5 1,528,312 + -0.3 1,528,325 - -1.0 1,528,331 + +0.6 1,528,399 + Synpcc7942_1477 0.12 +0.8 1,528,400 + Synpcc7942_1477 0.12 -2.6 1,528,407 - Synpcc7942_1477 0.12 -1.2 1,528,425 + Synpcc7942_1477 0.13 -0.5 1,528,433 - Synpcc7942_1477 0.13 +0.3 1,528,497 - Synpcc7942_1477 0.16 +0.6 1,528,502 - Synpcc7942_1477 0.16 -0.3 1,528,532 - Synpcc7942_1477 0.18 -0.8 1,528,581 + Synpcc7942_1477 0.20 +1.3 1,528,599 - Synpcc7942_1477 0.21 +0.3 1,528,621 + Synpcc7942_1477 0.22 -0.1 1,528,627 - Synpcc7942_1477 0.22 -0.0 1,528,629 - Synpcc7942_1477 0.22 +0.3 1,528,629 - Synpcc7942_1477 0.22 -0.0 1,528,629 - Synpcc7942_1477 0.22 -1.8 1,528,631 + Synpcc7942_1477 0.22 -0.3 1,528,639 - Synpcc7942_1477 0.23 +1.4 1,528,641 - Synpcc7942_1477 0.23 +1.5 1,528,659 - Synpcc7942_1477 0.24 -0.2 1,528,740 + Synpcc7942_1477 0.27 -1.7 1,528,742 + Synpcc7942_1477 0.27 +0.1 1,528,748 - Synpcc7942_1477 0.28 +0.5 1,528,748 - Synpcc7942_1477 0.28 -1.2 1,528,751 + Synpcc7942_1477 0.28 +0.6 1,528,759 - Synpcc7942_1477 0.28 -0.7 1,528,759 - Synpcc7942_1477 0.28 -2.5 1,528,761 - Synpcc7942_1477 0.28 -0.6 1,528,771 - Synpcc7942_1477 0.29 -1.3 1,528,791 - Synpcc7942_1477 0.30 +0.1 1,528,810 + Synpcc7942_1477 0.30 -0.4 1,528,826 + Synpcc7942_1477 0.31 -2.2 1,528,859 - Synpcc7942_1477 0.33 -0.4 1,528,909 + Synpcc7942_1477 0.35 +0.3 1,528,943 - Synpcc7942_1477 0.36 +0.0 1,528,944 - Synpcc7942_1477 0.37 +0.7 1,528,944 - Synpcc7942_1477 0.37 -0.7 1,528,947 + Synpcc7942_1477 0.37 +0.5 1,528,954 + Synpcc7942_1477 0.37 -0.5 1,528,955 - Synpcc7942_1477 0.37 +0.5 1,528,955 - Synpcc7942_1477 0.37 -0.2 1,528,959 + Synpcc7942_1477 0.37 +1.1 1,528,975 + Synpcc7942_1477 0.38 +1.2 1,528,979 + Synpcc7942_1477 0.38 -0.8 1,529,004 - Synpcc7942_1477 0.39 -0.7 1,529,018 + Synpcc7942_1477 0.40 +0.3
Or see this region's nucleotide sequence