Experiment: Light Dark first sampling rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_1332 and Synpcc7942_1333 overlap by 1 nucleotides Synpcc7942_1333 and trpE overlap by 4 nucleotides trpE and Synpcc7942_1335 overlap by 4 nucleotides
Synpcc7942_1332: Synpcc7942_1332 - hypothetical protein, at 1,363,471 to 1,364,091
_1332
Synpcc7942_1333: Synpcc7942_1333 - ExsB, at 1,364,091 to 1,364,786
_1333
Synpcc7942_1334: trpE - aminodeoxychorismate synthase, subunit I, at 1,364,783 to 1,366,180
trpE
Synpcc7942_1335: Synpcc7942_1335 - probable branched-chain amino acid aminotransferase, at 1,366,177 to 1,366,971
_1335
Position (kb)
1364
1365
1366
1367 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1363.802 kb on - strand, within Synpcc7942_1332 at 1363.829 kb on + strand, within Synpcc7942_1332 at 1363.873 kb on + strand, within Synpcc7942_1332 at 1363.881 kb on - strand, within Synpcc7942_1332 at 1363.938 kb on + strand, within Synpcc7942_1332 at 1363.942 kb on + strand, within Synpcc7942_1332 at 1363.985 kb on - strand, within Synpcc7942_1332 at 1363.985 kb on - strand, within Synpcc7942_1332 at 1363.989 kb on + strand, within Synpcc7942_1332 at 1364.108 kb on - strand at 1364.131 kb on - strand at 1364.145 kb on + strand at 1364.172 kb on - strand, within Synpcc7942_1333 at 1364.189 kb on + strand, within Synpcc7942_1333 at 1364.204 kb on - strand, within Synpcc7942_1333 at 1364.259 kb on - strand, within Synpcc7942_1333 at 1364.307 kb on - strand, within Synpcc7942_1333 at 1364.312 kb on - strand, within Synpcc7942_1333 at 1364.465 kb on + strand, within Synpcc7942_1333 at 1364.553 kb on + strand, within Synpcc7942_1333 at 1364.561 kb on - strand, within Synpcc7942_1333 at 1364.630 kb on - strand, within Synpcc7942_1333 at 1364.676 kb on - strand, within Synpcc7942_1333 at 1365.024 kb on + strand, within trpE at 1365.121 kb on + strand, within trpE at 1365.489 kb on + strand, within trpE at 1365.881 kb on + strand, within trpE at 1366.028 kb on - strand, within trpE at 1366.097 kb on + strand at 1366.159 kb on - strand at 1366.164 kb on + strand at 1366.334 kb on + strand, within Synpcc7942_1335 at 1366.399 kb on + strand, within Synpcc7942_1335 at 1366.446 kb on - strand, within Synpcc7942_1335 at 1366.446 kb on - strand, within Synpcc7942_1335 at 1366.446 kb on - strand, within Synpcc7942_1335 at 1366.446 kb on - strand, within Synpcc7942_1335 at 1366.466 kb on + strand, within Synpcc7942_1335 at 1366.613 kb on + strand, within Synpcc7942_1335 at 1366.613 kb on + strand, within Synpcc7942_1335 at 1366.640 kb on + strand, within Synpcc7942_1335 at 1366.671 kb on + strand, within Synpcc7942_1335 at 1366.753 kb on + strand, within Synpcc7942_1335 at 1366.766 kb on - strand, within Synpcc7942_1335 at 1366.773 kb on + strand, within Synpcc7942_1335 at 1366.917 kb on + strand at 1366.917 kb on + strand at 1366.935 kb on - strand at 1366.968 kb on - strand at 1367.019 kb on + strand at 1367.020 kb on + strand at 1367.027 kb on - strand at 1367.068 kb on + strand at 1367.086 kb on - strand at 1367.122 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep1 remove 1,363,802 - Synpcc7942_1332 0.53 -0.1 1,363,829 + Synpcc7942_1332 0.58 -0.5 1,363,873 + Synpcc7942_1332 0.65 -0.1 1,363,881 - Synpcc7942_1332 0.66 -0.1 1,363,938 + Synpcc7942_1332 0.75 -2.9 1,363,942 + Synpcc7942_1332 0.76 -1.1 1,363,985 - Synpcc7942_1332 0.83 -0.5 1,363,985 - Synpcc7942_1332 0.83 -1.3 1,363,989 + Synpcc7942_1332 0.83 +0.1 1,364,108 - -0.3 1,364,131 - -1.7 1,364,145 + +0.4 1,364,172 - Synpcc7942_1333 0.12 -0.3 1,364,189 + Synpcc7942_1333 0.14 -1.7 1,364,204 - Synpcc7942_1333 0.16 -2.2 1,364,259 - Synpcc7942_1333 0.24 -0.7 1,364,307 - Synpcc7942_1333 0.31 -0.7 1,364,312 - Synpcc7942_1333 0.32 -0.7 1,364,465 + Synpcc7942_1333 0.54 -1.7 1,364,553 + Synpcc7942_1333 0.66 -0.2 1,364,561 - Synpcc7942_1333 0.68 -3.0 1,364,630 - Synpcc7942_1333 0.77 -1.7 1,364,676 - Synpcc7942_1333 0.84 -0.4 1,365,024 + trpE Synpcc7942_1334 0.17 -3.0 1,365,121 + trpE Synpcc7942_1334 0.24 -2.9 1,365,489 + trpE Synpcc7942_1334 0.51 -1.3 1,365,881 + trpE Synpcc7942_1334 0.79 -2.0 1,366,028 - trpE Synpcc7942_1334 0.89 -3.6 1,366,097 + -2.3 1,366,159 - -0.5 1,366,164 + +0.9 1,366,334 + Synpcc7942_1335 0.20 -0.6 1,366,399 + Synpcc7942_1335 0.28 -0.6 1,366,446 - Synpcc7942_1335 0.34 -1.6 1,366,446 - Synpcc7942_1335 0.34 -2.4 1,366,446 - Synpcc7942_1335 0.34 -1.1 1,366,446 - Synpcc7942_1335 0.34 -1.3 1,366,466 + Synpcc7942_1335 0.36 -1.5 1,366,613 + Synpcc7942_1335 0.55 -1.0 1,366,613 + Synpcc7942_1335 0.55 -0.1 1,366,640 + Synpcc7942_1335 0.58 -0.2 1,366,671 + Synpcc7942_1335 0.62 +0.0 1,366,753 + Synpcc7942_1335 0.72 -1.6 1,366,766 - Synpcc7942_1335 0.74 -1.1 1,366,773 + Synpcc7942_1335 0.75 -0.9 1,366,917 + -1.6 1,366,917 + -0.4 1,366,935 - -0.1 1,366,968 - -1.8 1,367,019 + -0.1 1,367,020 + -0.1 1,367,027 - +0.7 1,367,068 + +0.7 1,367,086 - -0.6 1,367,122 - -0.8
Or see this region's nucleotide sequence