Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1218

Experiment: Light Dark first sampling rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Light Dark first sampling rep1
1,239,567	+	kaiC	Synpcc7942_1216	0.65	+0.1
1,239,567	+	kaiC	Synpcc7942_1216	0.65	-3.5
1,239,659	+	kaiC	Synpcc7942_1216	0.71	-1.3
1,239,755	+	kaiC	Synpcc7942_1216	0.77	-1.8
1,239,761	+	kaiC	Synpcc7942_1216	0.78	-0.5
1,239,770	-	kaiC	Synpcc7942_1216	0.78	+0.4
1,239,914	+	kaiC	Synpcc7942_1216	0.87	-1.2
1,240,261	+	kaiB	Synpcc7942_1217	0.33	+1.0
1,240,443	-				+1.4
1,240,463	+				+0.9
1,240,463	+				+0.3
1,240,543	-				+1.7
1,240,772	+	kaiA	Synpcc7942_1218	0.25	-0.7
1,240,827	+	kaiA	Synpcc7942_1218	0.32	-2.7
1,240,834	+	kaiA	Synpcc7942_1218	0.32	+0.3
1,240,907	+	kaiA	Synpcc7942_1218	0.41	-2.3
1,240,925	-	kaiA	Synpcc7942_1218	0.43	-2.7
1,240,934	-	kaiA	Synpcc7942_1218	0.44	-3.0
1,240,934	-	kaiA	Synpcc7942_1218	0.44	-2.3
1,240,936	-	kaiA	Synpcc7942_1218	0.44	-3.6
1,240,966	-	kaiA	Synpcc7942_1218	0.48	-0.7
1,240,972	+	kaiA	Synpcc7942_1218	0.49	-2.5
1,240,989	+	kaiA	Synpcc7942_1218	0.51	-1.4
1,241,021	-	kaiA	Synpcc7942_1218	0.54	-1.3
1,241,021	-	kaiA	Synpcc7942_1218	0.54	-2.5
1,241,048	+	kaiA	Synpcc7942_1218	0.57	-1.8
1,241,053	+	kaiA	Synpcc7942_1218	0.58	-2.9
1,241,056	-	kaiA	Synpcc7942_1218	0.58	-2.5
1,241,065	-	kaiA	Synpcc7942_1218	0.59	-0.7
1,241,065	-	kaiA	Synpcc7942_1218	0.59	-4.1
1,241,092	-	kaiA	Synpcc7942_1218	0.63	-1.7
1,241,097	+	kaiA	Synpcc7942_1218	0.63	-0.7
1,241,097	+	kaiA	Synpcc7942_1218	0.63	-0.7
1,241,100	-	kaiA	Synpcc7942_1218	0.64	-1.7
1,241,102	+	kaiA	Synpcc7942_1218	0.64	-1.1
1,241,102	+	kaiA	Synpcc7942_1218	0.64	-1.2
1,241,121	-	kaiA	Synpcc7942_1218	0.66	-1.2
1,241,155	-	kaiA	Synpcc7942_1218	0.70	-2.1
1,241,191	-	kaiA	Synpcc7942_1218	0.74	-1.6
1,241,192	+	kaiA	Synpcc7942_1218	0.74	-1.5
1,241,192	+	kaiA	Synpcc7942_1218	0.74	-1.8
1,241,200	-	kaiA	Synpcc7942_1218	0.75	+0.3
1,241,205	-	kaiA	Synpcc7942_1218	0.76	-0.8
1,241,227	-	kaiA	Synpcc7942_1218	0.78	-1.6
1,241,269	+	kaiA	Synpcc7942_1218	0.83	-1.9
1,241,284	+	kaiA	Synpcc7942_1218	0.85	-1.9
1,241,288	-	kaiA	Synpcc7942_1218	0.85	-1.3
1,241,294	-	kaiA	Synpcc7942_1218	0.86	-2.6
1,241,306	+	kaiA	Synpcc7942_1218	0.88	-4.5
1,241,321	-	kaiA	Synpcc7942_1218	0.89	-1.7
1,241,350	-				-2.6
1,241,423	+				+0.5
1,241,431	-				-2.2
1,241,446	+				-0.1
1,241,480	+				+1.8
1,241,480	+				+1.8
1,241,488	-				+0.2
1,241,491	-				+1.0
1,242,306	+	rpl27	Synpcc7942_1220	0.90	-0.9
1,242,366	+				+0.5
1,242,380	-				+0.7