Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1002

Experiment: Light Dark first sampling rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlysC and psaD are separated by 151 nucleotidespsaD and trpE are separated by 117 nucleotides Synpcc7942_1001: lysC - aspartate kinase, at 1,011,886 to 1,013,736 lysC Synpcc7942_1002: psaD - photosystem I reaction center subunit II, at 1,013,888 to 1,014,316 psaD Synpcc7942_1003: trpE - anthranilate synthase, component I, at 1,014,434 to 1,015,987 trpE Position (kb) 1013 1014 1015Strain fitness (log2 ratio) -2 -1 0 1at 1013.669 kb on + strandat 1013.712 kb on + strandat 1013.712 kb on + strandat 1013.714 kb on + strandat 1013.722 kb on - strandat 1013.767 kb on - strandat 1013.774 kb on + strandat 1013.777 kb on - strandat 1013.800 kb on - strandat 1013.807 kb on + strandat 1014.319 kb on - strandat 1014.348 kb on - strandat 1014.351 kb on + strandat 1014.372 kb on + strandat 1014.425 kb on - strandat 1014.425 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Light Dark first sampling rep1
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1,013,669 + -0.4
1,013,712 + -0.9
1,013,712 + -1.8
1,013,714 + +0.5
1,013,722 - -1.0
1,013,767 - -0.6
1,013,774 + +0.7
1,013,777 - +1.4
1,013,800 - -1.4
1,013,807 + -0.2
1,014,319 - -1.4
1,014,348 - -0.2
1,014,351 + +1.6
1,014,372 + +0.3
1,014,425 - +0.9
1,014,425 - -0.1

Or see this region's nucleotide sequence