Experiment: Light Dark first sampling rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gltX and mtaP overlap by 1 nucleotides mtaP and nblS are separated by 51 nucleotides nblS and purD are separated by 63 nucleotides
Synpcc7942_0922: gltX - Glutamate--tRNA ligase, at 927,391 to 928,293
gltX
Synpcc7942_0923: mtaP - 5'-methylthioadenosine phosphorylase, at 928,293 to 929,168
mtaP
Synpcc7942_0924: nblS - multi-sensor signal transduction histidine kinase, at 929,220 to 931,214
nblS
Synpcc7942_0925: purD - phosphoribosylamine--glycine ligase, at 931,278 to 932,579
purD
Position (kb) 929
930
931
932 Strain fitness (log2 ratio) -2
-1
0
1 at 928.354 kb on - strand at 928.365 kb on + strand at 928.372 kb on + strand at 928.372 kb on + strand at 928.408 kb on - strand, within mtaP at 928.506 kb on + strand, within mtaP at 928.514 kb on - strand, within mtaP at 928.535 kb on - strand, within mtaP at 928.535 kb on - strand, within mtaP at 928.544 kb on + strand, within mtaP at 928.635 kb on + strand, within mtaP at 928.635 kb on + strand, within mtaP at 928.640 kb on + strand, within mtaP at 928.643 kb on - strand, within mtaP at 928.664 kb on + strand, within mtaP at 928.683 kb on + strand, within mtaP at 928.690 kb on + strand, within mtaP at 928.755 kb on + strand, within mtaP at 928.755 kb on + strand, within mtaP at 928.758 kb on - strand, within mtaP at 928.760 kb on + strand, within mtaP at 928.762 kb on + strand, within mtaP at 928.765 kb on + strand, within mtaP at 928.765 kb on + strand, within mtaP at 928.765 kb on + strand, within mtaP at 928.765 kb on + strand, within mtaP at 928.768 kb on - strand, within mtaP at 928.768 kb on - strand, within mtaP at 928.768 kb on - strand, within mtaP at 928.768 kb on - strand, within mtaP at 928.768 kb on - strand, within mtaP at 928.773 kb on - strand, within mtaP at 928.825 kb on - strand, within mtaP at 928.866 kb on - strand, within mtaP at 928.878 kb on + strand, within mtaP at 928.892 kb on + strand, within mtaP at 928.899 kb on + strand, within mtaP at 928.909 kb on - strand, within mtaP at 929.032 kb on + strand, within mtaP at 929.032 kb on + strand, within mtaP at 929.104 kb on + strand at 929.104 kb on + strand at 929.112 kb on - strand at 929.127 kb on - strand at 929.137 kb on + strand at 929.172 kb on + strand at 929.201 kb on - strand at 929.260 kb on + strand at 931.210 kb on + strand at 931.223 kb on + strand at 931.223 kb on + strand at 931.223 kb on + strand at 931.223 kb on + strand at 931.223 kb on + strand at 931.223 kb on + strand at 931.231 kb on - strand at 931.231 kb on - strand at 931.231 kb on - strand at 931.242 kb on + strand at 931.251 kb on - strand at 931.256 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep1 remove 928,354 - +0.5 928,365 + -1.2 928,372 + -1.0 928,372 + +0.0 928,408 - mtaP Synpcc7942_0923 0.13 +0.1 928,506 + mtaP Synpcc7942_0923 0.24 +0.3 928,514 - mtaP Synpcc7942_0923 0.25 -1.6 928,535 - mtaP Synpcc7942_0923 0.28 -0.7 928,535 - mtaP Synpcc7942_0923 0.28 +0.3 928,544 + mtaP Synpcc7942_0923 0.29 +0.1 928,635 + mtaP Synpcc7942_0923 0.39 -0.7 928,635 + mtaP Synpcc7942_0923 0.39 -0.9 928,640 + mtaP Synpcc7942_0923 0.40 +0.3 928,643 - mtaP Synpcc7942_0923 0.40 -0.1 928,664 + mtaP Synpcc7942_0923 0.42 +0.1 928,683 + mtaP Synpcc7942_0923 0.45 +0.2 928,690 + mtaP Synpcc7942_0923 0.45 -0.4 928,755 + mtaP Synpcc7942_0923 0.53 -0.9 928,755 + mtaP Synpcc7942_0923 0.53 -0.3 928,758 - mtaP Synpcc7942_0923 0.53 +0.4 928,760 + mtaP Synpcc7942_0923 0.53 +0.1 928,762 + mtaP Synpcc7942_0923 0.54 +0.1 928,765 + mtaP Synpcc7942_0923 0.54 -0.4 928,765 + mtaP Synpcc7942_0923 0.54 +0.5 928,765 + mtaP Synpcc7942_0923 0.54 -0.7 928,765 + mtaP Synpcc7942_0923 0.54 +1.1 928,768 - mtaP Synpcc7942_0923 0.54 +0.7 928,768 - mtaP Synpcc7942_0923 0.54 -1.5 928,768 - mtaP Synpcc7942_0923 0.54 +0.6 928,768 - mtaP Synpcc7942_0923 0.54 -0.3 928,768 - mtaP Synpcc7942_0923 0.54 +0.7 928,773 - mtaP Synpcc7942_0923 0.55 -1.1 928,825 - mtaP Synpcc7942_0923 0.61 -2.5 928,866 - mtaP Synpcc7942_0923 0.65 +0.0 928,878 + mtaP Synpcc7942_0923 0.67 -1.4 928,892 + mtaP Synpcc7942_0923 0.68 -1.2 928,899 + mtaP Synpcc7942_0923 0.69 -0.3 928,909 - mtaP Synpcc7942_0923 0.70 -0.5 929,032 + mtaP Synpcc7942_0923 0.84 -0.5 929,032 + mtaP Synpcc7942_0923 0.84 -1.7 929,104 + +1.6 929,104 + -0.2 929,112 - -0.2 929,127 - -2.0 929,137 + -0.5 929,172 + -0.7 929,201 - -0.3 929,260 + +0.1 931,210 + -0.4 931,223 + +0.6 931,223 + -0.2 931,223 + -0.5 931,223 + +0.6 931,223 + -1.7 931,223 + +0.1 931,231 - -1.1 931,231 - +0.3 931,231 - -0.6 931,242 + -1.4 931,251 - -1.2 931,256 + +0.6
Or see this region's nucleotide sequence