Experiment: Light Dark first sampling rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aroQ and Synpcc7942_0916 are separated by 10 nucleotides Synpcc7942_0916 and tRNA-Tyr are separated by 174 nucleotides tRNA-Tyr and tRNA-Thr are separated by 7 nucleotides tRNA-Thr and Synpcc7942_0917 are separated by 209 nucleotides Synpcc7942_0917 and aas are separated by 285 nucleotides
Synpcc7942_0915: aroQ - 3-dehydroquinate dehydratase, at 922,388 to 922,837
aroQ
Synpcc7942_0916: Synpcc7942_0916 - hypothetical protein, at 922,848 to 922,976
_0916
Synpcc7942_R0042: tRNA-Tyr - tRNA-Tyr, at 923,151 to 923,235
tRNA-Tyr
Synpcc7942_R0043: tRNA-Thr - tRNA-Thr, at 923,243 to 923,317
tRNA-Thr
Synpcc7942_0917: Synpcc7942_0917 - hypothetical protein, at 923,527 to 923,793
_0917
Synpcc7942_0918: aas - long-chain-fatty-acid CoA ligase, at 924,079 to 926,028
aas
Position (kb) 923
924 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 922.846 kb on + strand at 922.867 kb on + strand, within Synpcc7942_0916 at 922.880 kb on + strand, within Synpcc7942_0916 at 922.903 kb on + strand, within Synpcc7942_0916 at 922.989 kb on + strand at 923.051 kb on + strand at 923.059 kb on - strand at 923.059 kb on - strand at 923.061 kb on + strand at 923.062 kb on + strand at 923.072 kb on + strand at 923.348 kb on + strand at 923.348 kb on + strand at 923.356 kb on - strand at 923.356 kb on - strand at 923.356 kb on - strand at 923.368 kb on + strand at 923.381 kb on - strand at 923.408 kb on + strand at 923.409 kb on + strand at 923.409 kb on + strand at 923.416 kb on - strand at 923.416 kb on - strand at 923.416 kb on - strand at 923.417 kb on - strand at 923.438 kb on + strand at 923.438 kb on + strand at 923.446 kb on - strand at 923.446 kb on - strand at 923.498 kb on - strand at 923.512 kb on + strand at 923.512 kb on - strand at 923.517 kb on - strand at 923.520 kb on - strand at 923.523 kb on + strand at 923.525 kb on - strand at 923.549 kb on - strand at 923.552 kb on + strand at 923.559 kb on + strand, within Synpcc7942_0917 at 923.593 kb on - strand, within Synpcc7942_0917 at 923.604 kb on + strand, within Synpcc7942_0917 at 923.618 kb on + strand, within Synpcc7942_0917 at 923.626 kb on - strand, within Synpcc7942_0917 at 923.636 kb on - strand, within Synpcc7942_0917 at 923.659 kb on - strand, within Synpcc7942_0917 at 923.681 kb on - strand, within Synpcc7942_0917 at 923.707 kb on - strand, within Synpcc7942_0917 at 923.719 kb on - strand, within Synpcc7942_0917 at 923.812 kb on - strand at 923.815 kb on - strand at 923.817 kb on + strand at 923.817 kb on + strand at 923.825 kb on - strand at 923.833 kb on - strand at 923.853 kb on - strand at 923.858 kb on - strand at 923.869 kb on + strand at 923.869 kb on + strand at 923.869 kb on + strand at 923.874 kb on + strand at 923.882 kb on - strand at 923.909 kb on + strand at 923.917 kb on - strand at 923.922 kb on + strand at 923.941 kb on + strand at 923.949 kb on - strand at 923.957 kb on - strand at 923.975 kb on + strand at 923.977 kb on + strand at 924.009 kb on + strand at 924.009 kb on + strand at 924.014 kb on - strand at 924.017 kb on - strand at 924.068 kb on + strand at 924.075 kb on - strand at 924.110 kb on + strand at 924.118 kb on - strand at 924.120 kb on - strand at 924.132 kb on + strand at 924.147 kb on + strand at 924.152 kb on + strand at 924.160 kb on - strand at 924.171 kb on - strand at 924.204 kb on + strand at 924.268 kb on - strand at 924.329 kb on - strand, within aas at 924.334 kb on + strand, within aas at 924.334 kb on + strand, within aas at 924.380 kb on - strand, within aas at 924.400 kb on - strand, within aas at 924.403 kb on + strand, within aas at 924.422 kb on - strand, within aas at 924.465 kb on + strand, within aas at 924.468 kb on - strand, within aas at 924.473 kb on + strand, within aas at 924.473 kb on + strand, within aas at 924.473 kb on + strand, within aas at 924.473 kb on - strand, within aas at 924.473 kb on - strand, within aas at 924.481 kb on - strand, within aas at 924.481 kb on - strand, within aas at 924.481 kb on - strand, within aas at 924.520 kb on - strand at 924.522 kb on + strand, within aas at 924.522 kb on + strand, within aas at 924.530 kb on - strand, within aas at 924.540 kb on - strand, within aas at 924.541 kb on + strand, within aas at 924.541 kb on + strand, within aas at 924.549 kb on - strand, within aas at 924.556 kb on + strand, within aas at 924.572 kb on - strand, within aas at 924.589 kb on - strand, within aas at 924.591 kb on + strand, within aas at 924.595 kb on + strand, within aas at 924.599 kb on - strand, within aas at 924.607 kb on - strand, within aas at 924.614 kb on + strand, within aas at 924.637 kb on + strand, within aas at 924.699 kb on + strand, within aas at 924.702 kb on - strand, within aas at 924.702 kb on - strand, within aas at 924.707 kb on - strand, within aas at 924.716 kb on + strand, within aas at 924.716 kb on + strand, within aas at 924.726 kb on + strand, within aas at 924.733 kb on + strand, within aas at 924.782 kb on - strand, within aas at 924.784 kb on - strand, within aas
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep1 remove 922,846 + +0.8 922,867 + Synpcc7942_0916 0.15 -1.5 922,880 + Synpcc7942_0916 0.25 -1.2 922,903 + Synpcc7942_0916 0.43 +0.1 922,989 + +0.6 923,051 + +0.1 923,059 - +1.9 923,059 - -0.3 923,061 + -0.5 923,062 + +0.1 923,072 + -0.5 923,348 + -0.5 923,348 + -0.1 923,356 - -1.8 923,356 - +0.8 923,356 - +0.8 923,368 + +0.4 923,381 - +0.1 923,408 + -0.6 923,409 + -0.5 923,409 + +1.1 923,416 - +1.1 923,416 - +0.2 923,416 - -1.2 923,417 - +0.5 923,438 + +0.3 923,438 + -0.7 923,446 - -0.6 923,446 - -1.3 923,498 - -0.4 923,512 + +0.5 923,512 - -2.1 923,517 - -0.6 923,520 - +0.1 923,523 + -0.4 923,525 - -1.2 923,549 - -2.9 923,552 + -1.5 923,559 + Synpcc7942_0917 0.12 -1.5 923,593 - Synpcc7942_0917 0.25 -0.7 923,604 + Synpcc7942_0917 0.29 -0.7 923,618 + Synpcc7942_0917 0.34 +0.2 923,626 - Synpcc7942_0917 0.37 -0.1 923,636 - Synpcc7942_0917 0.41 -0.0 923,659 - Synpcc7942_0917 0.49 -2.3 923,681 - Synpcc7942_0917 0.58 -2.3 923,707 - Synpcc7942_0917 0.67 -0.8 923,719 - Synpcc7942_0917 0.72 +0.6 923,812 - -0.4 923,815 - -1.2 923,817 + +0.1 923,817 + -0.6 923,825 - -1.0 923,833 - -0.4 923,853 - -0.6 923,858 - -1.7 923,869 + -0.3 923,869 + -0.2 923,869 + -0.2 923,874 + -0.2 923,882 - -2.1 923,909 + -1.1 923,917 - +0.9 923,922 + +0.3 923,941 + +1.2 923,949 - +0.8 923,957 - +1.3 923,975 + -0.3 923,977 + -0.5 924,009 + +0.6 924,009 + -0.9 924,014 - +0.2 924,017 - -0.5 924,068 + -1.0 924,075 - -0.6 924,110 + +3.6 924,118 - -0.7 924,120 - -0.2 924,132 + -0.2 924,147 + -1.0 924,152 + -0.9 924,160 - -1.0 924,171 - -0.1 924,204 + -0.6 924,268 - +1.5 924,329 - aas Synpcc7942_0918 0.13 +0.4 924,334 + aas Synpcc7942_0918 0.13 +1.4 924,334 + aas Synpcc7942_0918 0.13 -0.2 924,380 - aas Synpcc7942_0918 0.15 +1.1 924,400 - aas Synpcc7942_0918 0.16 -0.3 924,403 + aas Synpcc7942_0918 0.17 -0.2 924,422 - aas Synpcc7942_0918 0.18 -0.6 924,465 + aas Synpcc7942_0918 0.20 +0.0 924,468 - aas Synpcc7942_0918 0.20 -0.7 924,473 + aas Synpcc7942_0918 0.20 -0.4 924,473 + aas Synpcc7942_0918 0.20 -0.9 924,473 + aas Synpcc7942_0918 0.20 -0.4 924,473 - aas Synpcc7942_0918 0.20 -0.2 924,473 - aas Synpcc7942_0918 0.20 -1.3 924,481 - aas Synpcc7942_0918 0.21 -1.7 924,481 - aas Synpcc7942_0918 0.21 +0.8 924,481 - aas Synpcc7942_0918 0.21 -1.5 924,520 - +1.6 924,522 + aas Synpcc7942_0918 0.23 -0.3 924,522 + aas Synpcc7942_0918 0.23 +0.5 924,530 - aas Synpcc7942_0918 0.23 -0.3 924,540 - aas Synpcc7942_0918 0.24 -0.2 924,541 + aas Synpcc7942_0918 0.24 -1.5 924,541 + aas Synpcc7942_0918 0.24 -0.2 924,549 - aas Synpcc7942_0918 0.24 +0.0 924,556 + aas Synpcc7942_0918 0.24 -0.0 924,572 - aas Synpcc7942_0918 0.25 -1.2 924,589 - aas Synpcc7942_0918 0.26 -1.4 924,591 + aas Synpcc7942_0918 0.26 -0.6 924,595 + aas Synpcc7942_0918 0.26 -1.6 924,599 - aas Synpcc7942_0918 0.27 +0.6 924,607 - aas Synpcc7942_0918 0.27 +0.7 924,614 + aas Synpcc7942_0918 0.27 +0.4 924,637 + aas Synpcc7942_0918 0.29 +0.6 924,699 + aas Synpcc7942_0918 0.32 +0.3 924,702 - aas Synpcc7942_0918 0.32 -0.5 924,702 - aas Synpcc7942_0918 0.32 +0.6 924,707 - aas Synpcc7942_0918 0.32 -0.2 924,716 + aas Synpcc7942_0918 0.33 -1.2 924,716 + aas Synpcc7942_0918 0.33 +0.1 924,726 + aas Synpcc7942_0918 0.33 +0.8 924,733 + aas Synpcc7942_0918 0.34 +0.2 924,782 - aas Synpcc7942_0918 0.36 +0.6 924,784 - aas Synpcc7942_0918 0.36 +0.2
Or see this region's nucleotide sequence