Experiment: Light Dark first sampling rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0914 and aroQ overlap by 4 nucleotides aroQ and Synpcc7942_0916 are separated by 10 nucleotides Synpcc7942_0916 and tRNA-Tyr are separated by 174 nucleotides tRNA-Tyr and tRNA-Thr are separated by 7 nucleotides tRNA-Thr and Synpcc7942_0917 are separated by 209 nucleotides
Synpcc7942_0914: Synpcc7942_0914 - tRNA-(MS(2)IO(6)A)-hydroxylase-like, at 921,780 to 922,391
_0914
Synpcc7942_0915: aroQ - 3-dehydroquinate dehydratase, at 922,388 to 922,837
aroQ
Synpcc7942_0916: Synpcc7942_0916 - hypothetical protein, at 922,848 to 922,976
_0916
Synpcc7942_R0042: tRNA-Tyr - tRNA-Tyr, at 923,151 to 923,235
tRNA-Tyr
Synpcc7942_R0043: tRNA-Thr - tRNA-Thr, at 923,243 to 923,317
tRNA-Thr
Synpcc7942_0917: Synpcc7942_0917 - hypothetical protein, at 923,527 to 923,793
_0917
Position (kb) 922
923 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 921.861 kb on - strand, within Synpcc7942_0914 at 921.861 kb on - strand, within Synpcc7942_0914 at 921.920 kb on + strand, within Synpcc7942_0914 at 921.928 kb on - strand, within Synpcc7942_0914 at 921.930 kb on - strand, within Synpcc7942_0914 at 921.938 kb on - strand, within Synpcc7942_0914 at 921.988 kb on + strand, within Synpcc7942_0914 at 922.000 kb on + strand, within Synpcc7942_0914 at 922.003 kb on - strand, within Synpcc7942_0914 at 922.003 kb on - strand, within Synpcc7942_0914 at 922.054 kb on + strand, within Synpcc7942_0914 at 922.067 kb on + strand, within Synpcc7942_0914 at 922.072 kb on + strand, within Synpcc7942_0914 at 922.072 kb on + strand, within Synpcc7942_0914 at 922.072 kb on + strand, within Synpcc7942_0914 at 922.075 kb on - strand, within Synpcc7942_0914 at 922.077 kb on + strand, within Synpcc7942_0914 at 922.080 kb on - strand, within Synpcc7942_0914 at 922.082 kb on + strand, within Synpcc7942_0914 at 922.095 kb on + strand, within Synpcc7942_0914 at 922.099 kb on + strand, within Synpcc7942_0914 at 922.103 kb on - strand, within Synpcc7942_0914 at 922.132 kb on + strand, within Synpcc7942_0914 at 922.133 kb on - strand, within Synpcc7942_0914 at 922.133 kb on - strand, within Synpcc7942_0914 at 922.144 kb on + strand, within Synpcc7942_0914 at 922.144 kb on + strand, within Synpcc7942_0914 at 922.144 kb on + strand, within Synpcc7942_0914 at 922.144 kb on + strand, within Synpcc7942_0914 at 922.144 kb on + strand, within Synpcc7942_0914 at 922.152 kb on - strand, within Synpcc7942_0914 at 922.152 kb on - strand, within Synpcc7942_0914 at 922.154 kb on + strand, within Synpcc7942_0914 at 922.162 kb on - strand, within Synpcc7942_0914 at 922.172 kb on + strand, within Synpcc7942_0914 at 922.172 kb on - strand, within Synpcc7942_0914 at 922.180 kb on - strand, within Synpcc7942_0914 at 922.180 kb on - strand, within Synpcc7942_0914 at 922.183 kb on + strand, within Synpcc7942_0914 at 922.186 kb on - strand, within Synpcc7942_0914 at 922.191 kb on - strand, within Synpcc7942_0914 at 922.205 kb on + strand, within Synpcc7942_0914 at 922.213 kb on - strand, within Synpcc7942_0914 at 922.243 kb on - strand, within Synpcc7942_0914 at 922.249 kb on - strand, within Synpcc7942_0914 at 922.271 kb on + strand, within Synpcc7942_0914 at 922.275 kb on - strand, within Synpcc7942_0914 at 922.325 kb on + strand, within Synpcc7942_0914 at 922.333 kb on - strand at 922.338 kb on - strand at 922.370 kb on - strand at 922.379 kb on - strand at 922.379 kb on - strand at 922.387 kb on + strand at 922.846 kb on + strand at 922.867 kb on + strand, within Synpcc7942_0916 at 922.880 kb on + strand, within Synpcc7942_0916 at 922.903 kb on + strand, within Synpcc7942_0916 at 922.989 kb on + strand at 923.051 kb on + strand at 923.059 kb on - strand at 923.059 kb on - strand at 923.061 kb on + strand at 923.062 kb on + strand at 923.072 kb on + strand at 923.348 kb on + strand at 923.348 kb on + strand at 923.356 kb on - strand at 923.356 kb on - strand at 923.356 kb on - strand at 923.368 kb on + strand at 923.381 kb on - strand at 923.408 kb on + strand at 923.409 kb on + strand at 923.409 kb on + strand at 923.416 kb on - strand at 923.416 kb on - strand at 923.416 kb on - strand at 923.417 kb on - strand at 923.438 kb on + strand at 923.438 kb on + strand at 923.446 kb on - strand at 923.446 kb on - strand at 923.498 kb on - strand at 923.512 kb on + strand at 923.512 kb on - strand at 923.517 kb on - strand at 923.520 kb on - strand at 923.523 kb on + strand at 923.525 kb on - strand at 923.549 kb on - strand at 923.552 kb on + strand at 923.559 kb on + strand, within Synpcc7942_0917 at 923.593 kb on - strand, within Synpcc7942_0917 at 923.604 kb on + strand, within Synpcc7942_0917 at 923.618 kb on + strand, within Synpcc7942_0917 at 923.626 kb on - strand, within Synpcc7942_0917 at 923.636 kb on - strand, within Synpcc7942_0917 at 923.659 kb on - strand, within Synpcc7942_0917 at 923.681 kb on - strand, within Synpcc7942_0917 at 923.707 kb on - strand, within Synpcc7942_0917 at 923.719 kb on - strand, within Synpcc7942_0917 at 923.812 kb on - strand at 923.815 kb on - strand at 923.817 kb on + strand at 923.817 kb on + strand at 923.825 kb on - strand at 923.833 kb on - strand at 923.853 kb on - strand at 923.858 kb on - strand at 923.869 kb on + strand at 923.869 kb on + strand at 923.869 kb on + strand at 923.874 kb on + strand at 923.882 kb on - strand at 923.909 kb on + strand at 923.917 kb on - strand at 923.922 kb on + strand at 923.941 kb on + strand at 923.949 kb on - strand at 923.957 kb on - strand at 923.975 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep1 remove 921,861 - Synpcc7942_0914 0.13 -0.1 921,861 - Synpcc7942_0914 0.13 +1.2 921,920 + Synpcc7942_0914 0.23 -1.0 921,928 - Synpcc7942_0914 0.24 -0.0 921,930 - Synpcc7942_0914 0.25 -0.1 921,938 - Synpcc7942_0914 0.26 -0.5 921,988 + Synpcc7942_0914 0.34 +0.6 922,000 + Synpcc7942_0914 0.36 -0.6 922,003 - Synpcc7942_0914 0.36 +0.5 922,003 - Synpcc7942_0914 0.36 -1.1 922,054 + Synpcc7942_0914 0.45 -0.4 922,067 + Synpcc7942_0914 0.47 -1.2 922,072 + Synpcc7942_0914 0.48 -0.8 922,072 + Synpcc7942_0914 0.48 +0.1 922,072 + Synpcc7942_0914 0.48 -0.2 922,075 - Synpcc7942_0914 0.48 -0.3 922,077 + Synpcc7942_0914 0.49 +0.4 922,080 - Synpcc7942_0914 0.49 +0.2 922,082 + Synpcc7942_0914 0.49 -0.1 922,095 + Synpcc7942_0914 0.51 +0.1 922,099 + Synpcc7942_0914 0.52 +0.4 922,103 - Synpcc7942_0914 0.53 +0.8 922,132 + Synpcc7942_0914 0.58 -1.0 922,133 - Synpcc7942_0914 0.58 +0.4 922,133 - Synpcc7942_0914 0.58 +0.9 922,144 + Synpcc7942_0914 0.59 -2.0 922,144 + Synpcc7942_0914 0.59 +1.6 922,144 + Synpcc7942_0914 0.59 -1.4 922,144 + Synpcc7942_0914 0.59 +1.0 922,144 + Synpcc7942_0914 0.59 +0.6 922,152 - Synpcc7942_0914 0.61 -0.0 922,152 - Synpcc7942_0914 0.61 -1.2 922,154 + Synpcc7942_0914 0.61 -0.4 922,162 - Synpcc7942_0914 0.62 +0.4 922,172 + Synpcc7942_0914 0.64 +0.4 922,172 - Synpcc7942_0914 0.64 -0.9 922,180 - Synpcc7942_0914 0.65 -0.2 922,180 - Synpcc7942_0914 0.65 -0.9 922,183 + Synpcc7942_0914 0.66 -0.9 922,186 - Synpcc7942_0914 0.66 +0.8 922,191 - Synpcc7942_0914 0.67 +0.2 922,205 + Synpcc7942_0914 0.69 +1.4 922,213 - Synpcc7942_0914 0.71 -0.4 922,243 - Synpcc7942_0914 0.76 -1.2 922,249 - Synpcc7942_0914 0.77 -0.7 922,271 + Synpcc7942_0914 0.80 -0.4 922,275 - Synpcc7942_0914 0.81 -0.5 922,325 + Synpcc7942_0914 0.89 +0.5 922,333 - +0.5 922,338 - -0.2 922,370 - -0.5 922,379 - +0.1 922,379 - -0.2 922,387 + -0.9 922,846 + +0.8 922,867 + Synpcc7942_0916 0.15 -1.5 922,880 + Synpcc7942_0916 0.25 -1.2 922,903 + Synpcc7942_0916 0.43 +0.1 922,989 + +0.6 923,051 + +0.1 923,059 - +1.9 923,059 - -0.3 923,061 + -0.5 923,062 + +0.1 923,072 + -0.5 923,348 + -0.5 923,348 + -0.1 923,356 - -1.8 923,356 - +0.8 923,356 - +0.8 923,368 + +0.4 923,381 - +0.1 923,408 + -0.6 923,409 + -0.5 923,409 + +1.1 923,416 - +1.1 923,416 - +0.2 923,416 - -1.2 923,417 - +0.5 923,438 + +0.3 923,438 + -0.7 923,446 - -0.6 923,446 - -1.3 923,498 - -0.4 923,512 + +0.5 923,512 - -2.1 923,517 - -0.6 923,520 - +0.1 923,523 + -0.4 923,525 - -1.2 923,549 - -2.9 923,552 + -1.5 923,559 + Synpcc7942_0917 0.12 -1.5 923,593 - Synpcc7942_0917 0.25 -0.7 923,604 + Synpcc7942_0917 0.29 -0.7 923,618 + Synpcc7942_0917 0.34 +0.2 923,626 - Synpcc7942_0917 0.37 -0.1 923,636 - Synpcc7942_0917 0.41 -0.0 923,659 - Synpcc7942_0917 0.49 -2.3 923,681 - Synpcc7942_0917 0.58 -2.3 923,707 - Synpcc7942_0917 0.67 -0.8 923,719 - Synpcc7942_0917 0.72 +0.6 923,812 - -0.4 923,815 - -1.2 923,817 + +0.1 923,817 + -0.6 923,825 - -1.0 923,833 - -0.4 923,853 - -0.6 923,858 - -1.7 923,869 + -0.3 923,869 + -0.2 923,869 + -0.2 923,874 + -0.2 923,882 - -2.1 923,909 + -1.1 923,917 - +0.9 923,922 + +0.3 923,941 + +1.2 923,949 - +0.8 923,957 - +1.3 923,975 + -0.3
Or see this region's nucleotide sequence