Experiment: Light Dark first sampling rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0874 and Synpcc7942_0875 are separated by 3 nucleotides Synpcc7942_0875 and alaS are separated by 88 nucleotides alaS and rps12 are separated by 191 nucleotides
Synpcc7942_0874: Synpcc7942_0874 - DEAD/DEAH box helicase-like, at 874,390 to 877,449
_0874
Synpcc7942_0875: Synpcc7942_0875 - hypothetical protein, at 877,453 to 877,887
_0875
Synpcc7942_0876: alaS - alanyl-tRNA synthetase, at 877,976 to 880,675
alaS
Synpcc7942_0877: rps12 - Elongator protein 3/MiaB/NifB, at 880,867 to 883,485
rps12
Position (kb) 877
878
879
880
881 Strain fitness (log2 ratio) -1
0
1
2 at 877.000 kb on - strand, within Synpcc7942_0874 at 877.015 kb on - strand, within Synpcc7942_0874 at 877.071 kb on + strand, within Synpcc7942_0874 at 877.076 kb on + strand, within Synpcc7942_0874 at 877.079 kb on - strand, within Synpcc7942_0874 at 877.079 kb on - strand, within Synpcc7942_0874 at 877.081 kb on + strand, within Synpcc7942_0874 at 877.088 kb on + strand, within Synpcc7942_0874 at 877.096 kb on - strand, within Synpcc7942_0874 at 877.156 kb on + strand at 877.166 kb on - strand at 877.175 kb on + strand at 877.175 kb on + strand at 877.175 kb on + strand at 877.175 kb on + strand at 877.175 kb on + strand at 877.183 kb on - strand at 877.183 kb on - strand at 877.183 kb on - strand at 877.183 kb on - strand at 877.183 kb on - strand at 877.209 kb on - strand at 877.216 kb on - strand at 877.219 kb on + strand at 877.250 kb on - strand at 877.290 kb on - strand at 877.340 kb on + strand at 877.421 kb on - strand at 877.433 kb on + strand at 877.435 kb on + strand at 877.440 kb on + strand at 877.443 kb on - strand at 877.445 kb on + strand at 877.445 kb on + strand at 877.445 kb on + strand at 877.453 kb on - strand at 877.453 kb on - strand at 877.453 kb on - strand at 877.469 kb on + strand at 877.475 kb on + strand at 877.487 kb on - strand at 877.565 kb on - strand, within Synpcc7942_0875 at 877.567 kb on - strand, within Synpcc7942_0875 at 877.572 kb on + strand, within Synpcc7942_0875 at 877.605 kb on + strand, within Synpcc7942_0875 at 877.605 kb on + strand, within Synpcc7942_0875 at 877.605 kb on + strand, within Synpcc7942_0875 at 877.605 kb on + strand, within Synpcc7942_0875 at 877.605 kb on + strand, within Synpcc7942_0875 at 877.605 kb on + strand, within Synpcc7942_0875 at 877.605 kb on + strand, within Synpcc7942_0875 at 877.605 kb on + strand, within Synpcc7942_0875 at 877.605 kb on + strand, within Synpcc7942_0875 at 877.613 kb on - strand, within Synpcc7942_0875 at 877.613 kb on - strand, within Synpcc7942_0875 at 877.613 kb on - strand, within Synpcc7942_0875 at 877.613 kb on - strand, within Synpcc7942_0875 at 877.613 kb on - strand, within Synpcc7942_0875 at 877.613 kb on - strand, within Synpcc7942_0875 at 877.613 kb on - strand, within Synpcc7942_0875 at 877.618 kb on + strand, within Synpcc7942_0875 at 877.631 kb on - strand, within Synpcc7942_0875 at 877.632 kb on - strand, within Synpcc7942_0875 at 877.636 kb on + strand, within Synpcc7942_0875 at 877.644 kb on - strand, within Synpcc7942_0875 at 877.679 kb on + strand, within Synpcc7942_0875 at 877.679 kb on + strand, within Synpcc7942_0875 at 877.687 kb on - strand, within Synpcc7942_0875 at 877.687 kb on - strand, within Synpcc7942_0875 at 877.714 kb on + strand, within Synpcc7942_0875 at 877.737 kb on - strand, within Synpcc7942_0875 at 877.737 kb on - strand, within Synpcc7942_0875 at 877.761 kb on + strand, within Synpcc7942_0875 at 877.761 kb on + strand, within Synpcc7942_0875 at 877.761 kb on + strand, within Synpcc7942_0875 at 877.769 kb on - strand, within Synpcc7942_0875 at 877.788 kb on - strand, within Synpcc7942_0875 at 877.788 kb on - strand, within Synpcc7942_0875 at 877.828 kb on - strand, within Synpcc7942_0875 at 877.841 kb on - strand, within Synpcc7942_0875 at 877.858 kb on - strand at 877.899 kb on - strand at 877.907 kb on - strand at 877.927 kb on + strand at 877.931 kb on - strand at 877.980 kb on + strand at 878.049 kb on - strand at 878.059 kb on + strand at 880.651 kb on + strand at 880.659 kb on - strand at 880.678 kb on - strand at 880.684 kb on - strand at 880.710 kb on + strand at 880.751 kb on + strand at 880.751 kb on + strand at 880.751 kb on + strand at 880.751 kb on + strand at 880.759 kb on - strand at 880.776 kb on + strand at 880.803 kb on + strand at 880.804 kb on - strand at 880.813 kb on + strand at 880.813 kb on + strand at 880.816 kb on - strand at 880.816 kb on - strand at 880.823 kb on + strand at 880.835 kb on + strand at 880.869 kb on + strand at 880.877 kb on - strand at 880.905 kb on + strand at 880.928 kb on + strand at 880.945 kb on + strand at 880.953 kb on + strand at 880.955 kb on - strand at 880.981 kb on + strand at 880.999 kb on - strand at 880.999 kb on - strand at 881.033 kb on - strand at 881.037 kb on + strand at 881.046 kb on - strand at 881.049 kb on + strand at 881.174 kb on - strand, within rps12 at 881.191 kb on + strand, within rps12 at 881.241 kb on + strand, within rps12 at 881.249 kb on - strand, within rps12 at 881.259 kb on - strand, within rps12 at 881.259 kb on - strand, within rps12 at 881.259 kb on - strand, within rps12 at 881.288 kb on - strand, within rps12 at 881.290 kb on + strand, within rps12 at 881.298 kb on - strand, within rps12 at 881.323 kb on + strand, within rps12 at 881.349 kb on + strand, within rps12 at 881.420 kb on + strand, within rps12 at 881.443 kb on + strand, within rps12 at 881.452 kb on - strand, within rps12 at 881.458 kb on + strand, within rps12 at 881.458 kb on + strand, within rps12 at 881.466 kb on - strand, within rps12 at 881.483 kb on + strand, within rps12 at 881.489 kb on - strand, within rps12 at 881.489 kb on - strand, within rps12 at 881.533 kb on + strand, within rps12 at 881.544 kb on - strand, within rps12 at 881.554 kb on - strand, within rps12 at 881.617 kb on - strand, within rps12 at 881.617 kb on - strand, within rps12 at 881.630 kb on - strand, within rps12 at 881.640 kb on - strand, within rps12 at 881.674 kb on + strand, within rps12
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep1 remove 877,000 - Synpcc7942_0874 0.85 -0.5 877,015 - Synpcc7942_0874 0.86 +0.2 877,071 + Synpcc7942_0874 0.88 +0.1 877,076 + Synpcc7942_0874 0.88 +0.4 877,079 - Synpcc7942_0874 0.88 -0.2 877,079 - Synpcc7942_0874 0.88 +0.3 877,081 + Synpcc7942_0874 0.88 -0.3 877,088 + Synpcc7942_0874 0.88 +0.3 877,096 - Synpcc7942_0874 0.88 -0.2 877,156 + -0.1 877,166 - -0.5 877,175 + -0.7 877,175 + -0.3 877,175 + -0.8 877,175 + +0.4 877,175 + +0.4 877,183 - +0.1 877,183 - +0.3 877,183 - -1.1 877,183 - +0.8 877,183 - -0.1 877,209 - -1.1 877,216 - +0.1 877,219 + -0.1 877,250 - +0.1 877,290 - -0.4 877,340 + -0.0 877,421 - -1.7 877,433 + +0.2 877,435 + -0.5 877,440 + -0.3 877,443 - +1.4 877,445 + -1.3 877,445 + +0.6 877,445 + -1.2 877,453 - +0.1 877,453 - +0.0 877,453 - +0.3 877,469 + +0.1 877,475 + +0.9 877,487 - -0.3 877,565 - Synpcc7942_0875 0.26 -0.1 877,567 - Synpcc7942_0875 0.26 -0.6 877,572 + Synpcc7942_0875 0.27 +0.1 877,605 + Synpcc7942_0875 0.35 +0.6 877,605 + Synpcc7942_0875 0.35 +0.6 877,605 + Synpcc7942_0875 0.35 -0.3 877,605 + Synpcc7942_0875 0.35 -0.5 877,605 + Synpcc7942_0875 0.35 +0.2 877,605 + Synpcc7942_0875 0.35 +0.7 877,605 + Synpcc7942_0875 0.35 +0.3 877,605 + Synpcc7942_0875 0.35 +0.2 877,605 + Synpcc7942_0875 0.35 -0.8 877,613 - Synpcc7942_0875 0.37 -0.6 877,613 - Synpcc7942_0875 0.37 +0.5 877,613 - Synpcc7942_0875 0.37 -0.9 877,613 - Synpcc7942_0875 0.37 +1.1 877,613 - Synpcc7942_0875 0.37 -0.2 877,613 - Synpcc7942_0875 0.37 -0.5 877,613 - Synpcc7942_0875 0.37 -0.3 877,618 + Synpcc7942_0875 0.38 +0.6 877,631 - Synpcc7942_0875 0.41 +0.1 877,632 - Synpcc7942_0875 0.41 +0.2 877,636 + Synpcc7942_0875 0.42 +0.5 877,644 - Synpcc7942_0875 0.44 +0.2 877,679 + Synpcc7942_0875 0.52 +0.4 877,679 + Synpcc7942_0875 0.52 +0.9 877,687 - Synpcc7942_0875 0.54 +0.6 877,687 - Synpcc7942_0875 0.54 +0.1 877,714 + Synpcc7942_0875 0.60 +0.0 877,737 - Synpcc7942_0875 0.65 -1.7 877,737 - Synpcc7942_0875 0.65 +0.6 877,761 + Synpcc7942_0875 0.71 -1.5 877,761 + Synpcc7942_0875 0.71 +0.6 877,761 + Synpcc7942_0875 0.71 +1.0 877,769 - Synpcc7942_0875 0.73 +0.2 877,788 - Synpcc7942_0875 0.77 -0.0 877,788 - Synpcc7942_0875 0.77 +2.3 877,828 - Synpcc7942_0875 0.86 +0.3 877,841 - Synpcc7942_0875 0.89 +1.8 877,858 - +0.4 877,899 - -0.2 877,907 - +1.0 877,927 + +0.7 877,931 - +0.1 877,980 + +1.1 878,049 - +0.3 878,059 + +1.4 880,651 + +0.5 880,659 - +1.0 880,678 - -0.2 880,684 - -0.4 880,710 + -1.3 880,751 + -0.6 880,751 + +1.2 880,751 + -0.7 880,751 + +0.1 880,759 - +0.2 880,776 + -0.6 880,803 + -0.9 880,804 - +0.4 880,813 + +2.2 880,813 + +0.4 880,816 - -0.5 880,816 - -0.5 880,823 + -0.2 880,835 + +1.0 880,869 + +0.1 880,877 - -0.3 880,905 + -1.6 880,928 + -0.2 880,945 + +0.5 880,953 + +0.1 880,955 - -0.2 880,981 + +0.3 880,999 - +0.4 880,999 - +0.6 881,033 - -0.4 881,037 + +0.3 881,046 - +0.1 881,049 + +0.8 881,174 - rps12 Synpcc7942_0877 0.12 +0.1 881,191 + rps12 Synpcc7942_0877 0.12 -0.9 881,241 + rps12 Synpcc7942_0877 0.14 -1.0 881,249 - rps12 Synpcc7942_0877 0.15 +0.9 881,259 - rps12 Synpcc7942_0877 0.15 -0.1 881,259 - rps12 Synpcc7942_0877 0.15 +0.8 881,259 - rps12 Synpcc7942_0877 0.15 +0.5 881,288 - rps12 Synpcc7942_0877 0.16 -0.7 881,290 + rps12 Synpcc7942_0877 0.16 -0.2 881,298 - rps12 Synpcc7942_0877 0.16 +0.5 881,323 + rps12 Synpcc7942_0877 0.17 +1.4 881,349 + rps12 Synpcc7942_0877 0.18 +0.3 881,420 + rps12 Synpcc7942_0877 0.21 -1.1 881,443 + rps12 Synpcc7942_0877 0.22 -1.4 881,452 - rps12 Synpcc7942_0877 0.22 +0.2 881,458 + rps12 Synpcc7942_0877 0.23 +0.2 881,458 + rps12 Synpcc7942_0877 0.23 +0.3 881,466 - rps12 Synpcc7942_0877 0.23 -0.3 881,483 + rps12 Synpcc7942_0877 0.24 -0.7 881,489 - rps12 Synpcc7942_0877 0.24 -0.1 881,489 - rps12 Synpcc7942_0877 0.24 +0.4 881,533 + rps12 Synpcc7942_0877 0.25 -0.1 881,544 - rps12 Synpcc7942_0877 0.26 -0.4 881,554 - rps12 Synpcc7942_0877 0.26 -0.8 881,617 - rps12 Synpcc7942_0877 0.29 -0.5 881,617 - rps12 Synpcc7942_0877 0.29 -0.3 881,630 - rps12 Synpcc7942_0877 0.29 +0.4 881,640 - rps12 Synpcc7942_0877 0.30 -0.4 881,674 + rps12 Synpcc7942_0877 0.31 -0.1
Or see this region's nucleotide sequence