Experiment: Light Dark first sampling rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0812 and hisS are separated by 25 nucleotides hisS and Synpcc7942_0814 are separated by 32 nucleotides Synpcc7942_0814 and livF are separated by 6 nucleotides
Synpcc7942_0812: Synpcc7942_0812 - Heat shock protein DnaJ-like, at 806,893 to 807,813
_0812
Synpcc7942_0813: hisS - ATP phosphoribosyltransferase regulatory subunit, at 807,839 to 809,101
hisS
Synpcc7942_0814: Synpcc7942_0814 - ferredoxin-like protein, at 809,134 to 809,358
_0814
Synpcc7942_0815: livF - ATPase, at 809,365 to 810,096
livF
Position (kb) 807
808
809
810 Strain fitness (log2 ratio) -2
-1
0
1
2 at 806.855 kb on - strand at 806.896 kb on - strand at 806.927 kb on - strand at 806.927 kb on - strand at 806.927 kb on - strand at 806.951 kb on - strand at 806.961 kb on - strand at 806.973 kb on + strand at 807.021 kb on + strand, within Synpcc7942_0812 at 807.021 kb on + strand, within Synpcc7942_0812 at 807.021 kb on + strand, within Synpcc7942_0812 at 807.028 kb on - strand, within Synpcc7942_0812 at 807.029 kb on - strand, within Synpcc7942_0812 at 807.068 kb on + strand, within Synpcc7942_0812 at 807.075 kb on - strand, within Synpcc7942_0812 at 807.134 kb on + strand, within Synpcc7942_0812 at 807.213 kb on - strand, within Synpcc7942_0812 at 807.217 kb on + strand, within Synpcc7942_0812 at 807.217 kb on + strand, within Synpcc7942_0812 at 807.268 kb on + strand, within Synpcc7942_0812 at 807.291 kb on + strand, within Synpcc7942_0812 at 807.294 kb on - strand, within Synpcc7942_0812 at 807.299 kb on - strand, within Synpcc7942_0812 at 807.319 kb on + strand, within Synpcc7942_0812 at 807.323 kb on + strand at 807.337 kb on + strand, within Synpcc7942_0812 at 807.352 kb on - strand, within Synpcc7942_0812 at 807.355 kb on + strand at 807.360 kb on + strand, within Synpcc7942_0812 at 807.373 kb on - strand, within Synpcc7942_0812 at 807.383 kb on - strand, within Synpcc7942_0812 at 807.398 kb on + strand, within Synpcc7942_0812 at 807.399 kb on + strand, within Synpcc7942_0812 at 807.399 kb on + strand, within Synpcc7942_0812 at 807.399 kb on + strand, within Synpcc7942_0812 at 807.404 kb on + strand, within Synpcc7942_0812 at 807.406 kb on - strand at 807.406 kb on - strand, within Synpcc7942_0812 at 807.407 kb on - strand, within Synpcc7942_0812 at 807.410 kb on + strand, within Synpcc7942_0812 at 807.416 kb on - strand, within Synpcc7942_0812 at 807.418 kb on - strand at 807.433 kb on + strand, within Synpcc7942_0812 at 807.439 kb on + strand, within Synpcc7942_0812 at 807.477 kb on + strand, within Synpcc7942_0812 at 807.482 kb on + strand, within Synpcc7942_0812 at 807.485 kb on - strand, within Synpcc7942_0812 at 807.490 kb on - strand, within Synpcc7942_0812 at 807.500 kb on - strand, within Synpcc7942_0812 at 807.512 kb on + strand, within Synpcc7942_0812 at 807.512 kb on + strand, within Synpcc7942_0812 at 807.512 kb on + strand, within Synpcc7942_0812 at 807.514 kb on + strand, within Synpcc7942_0812 at 807.522 kb on + strand, within Synpcc7942_0812 at 807.522 kb on - strand at 807.561 kb on + strand, within Synpcc7942_0812 at 807.602 kb on + strand, within Synpcc7942_0812 at 807.607 kb on + strand, within Synpcc7942_0812 at 807.610 kb on + strand, within Synpcc7942_0812 at 807.610 kb on - strand, within Synpcc7942_0812 at 807.738 kb on + strand at 807.746 kb on - strand at 807.746 kb on - strand at 807.746 kb on - strand at 807.746 kb on - strand at 807.770 kb on - strand at 807.770 kb on - strand at 807.773 kb on + strand at 807.773 kb on + strand at 807.781 kb on - strand at 807.781 kb on - strand at 807.791 kb on - strand at 807.804 kb on + strand at 807.827 kb on - strand at 807.829 kb on + strand at 807.837 kb on - strand at 809.058 kb on + strand at 809.059 kb on - strand at 809.083 kb on + strand at 809.123 kb on + strand at 809.353 kb on + strand at 809.360 kb on + strand at 809.372 kb on - strand at 809.382 kb on - strand at 809.477 kb on + strand, within livF at 809.502 kb on + strand, within livF at 809.547 kb on - strand, within livF at 809.567 kb on + strand, within livF at 809.572 kb on + strand, within livF at 809.575 kb on - strand, within livF at 809.588 kb on + strand, within livF at 809.607 kb on + strand, within livF at 809.659 kb on - strand, within livF at 809.675 kb on + strand, within livF at 809.729 kb on + strand, within livF at 809.729 kb on + strand, within livF at 809.729 kb on + strand, within livF at 809.729 kb on + strand, within livF at 809.729 kb on + strand, within livF at 809.729 kb on + strand, within livF at 809.729 kb on + strand, within livF at 809.737 kb on - strand, within livF at 809.737 kb on - strand, within livF at 809.774 kb on + strand, within livF at 809.779 kb on + strand, within livF at 809.805 kb on - strand, within livF at 809.864 kb on + strand, within livF at 809.893 kb on - strand, within livF at 809.925 kb on - strand, within livF at 809.925 kb on - strand, within livF at 809.952 kb on + strand, within livF at 809.969 kb on + strand, within livF at 809.973 kb on + strand, within livF at 810.032 kb on + strand at 810.040 kb on - strand at 810.071 kb on + strand at 810.074 kb on - strand at 810.077 kb on - strand at 810.092 kb on + strand at 810.097 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep1 remove 806,855 - +0.5 806,896 - -0.2 806,927 - -1.7 806,927 - +0.5 806,927 - -0.1 806,951 - -0.3 806,961 - +0.6 806,973 + +0.4 807,021 + Synpcc7942_0812 0.14 -1.2 807,021 + Synpcc7942_0812 0.14 -0.0 807,021 + Synpcc7942_0812 0.14 +0.3 807,028 - Synpcc7942_0812 0.15 -0.0 807,029 - Synpcc7942_0812 0.15 +0.8 807,068 + Synpcc7942_0812 0.19 -1.6 807,075 - Synpcc7942_0812 0.20 +0.4 807,134 + Synpcc7942_0812 0.26 +0.4 807,213 - Synpcc7942_0812 0.35 -0.8 807,217 + Synpcc7942_0812 0.35 -1.9 807,217 + Synpcc7942_0812 0.35 +0.4 807,268 + Synpcc7942_0812 0.41 -0.2 807,291 + Synpcc7942_0812 0.43 +0.1 807,294 - Synpcc7942_0812 0.44 -0.9 807,299 - Synpcc7942_0812 0.44 +0.3 807,319 + Synpcc7942_0812 0.46 +0.2 807,323 + -0.4 807,337 + Synpcc7942_0812 0.48 +0.4 807,352 - Synpcc7942_0812 0.50 -0.6 807,355 + -0.2 807,360 + Synpcc7942_0812 0.51 -0.1 807,373 - Synpcc7942_0812 0.52 -1.2 807,383 - Synpcc7942_0812 0.53 -0.4 807,398 + Synpcc7942_0812 0.55 -0.2 807,399 + Synpcc7942_0812 0.55 +1.1 807,399 + Synpcc7942_0812 0.55 +2.0 807,399 + Synpcc7942_0812 0.55 +0.1 807,404 + Synpcc7942_0812 0.55 +0.3 807,406 - +1.3 807,406 - Synpcc7942_0812 0.56 +0.6 807,407 - Synpcc7942_0812 0.56 +0.4 807,410 + Synpcc7942_0812 0.56 +0.4 807,416 - Synpcc7942_0812 0.57 +0.8 807,418 - +0.9 807,433 + Synpcc7942_0812 0.59 -1.5 807,439 + Synpcc7942_0812 0.59 -0.7 807,477 + Synpcc7942_0812 0.63 +0.3 807,482 + Synpcc7942_0812 0.64 +0.6 807,485 - Synpcc7942_0812 0.64 +0.4 807,490 - Synpcc7942_0812 0.65 -0.0 807,500 - Synpcc7942_0812 0.66 -0.4 807,512 + Synpcc7942_0812 0.67 -0.4 807,512 + Synpcc7942_0812 0.67 +0.3 807,512 + Synpcc7942_0812 0.67 +0.5 807,514 + Synpcc7942_0812 0.67 -1.0 807,522 + Synpcc7942_0812 0.68 +0.9 807,522 - -0.4 807,561 + Synpcc7942_0812 0.73 -0.1 807,602 + Synpcc7942_0812 0.77 -0.1 807,607 + Synpcc7942_0812 0.78 +1.4 807,610 + Synpcc7942_0812 0.78 +1.1 807,610 - Synpcc7942_0812 0.78 -1.3 807,738 + +0.5 807,746 - +0.5 807,746 - +0.3 807,746 - +1.2 807,746 - +0.6 807,770 - -0.1 807,770 - +0.5 807,773 + +0.2 807,773 + -0.3 807,781 - +0.5 807,781 - +0.4 807,791 - +1.0 807,804 + -1.7 807,827 - -1.4 807,829 + +1.6 807,837 - -0.1 809,058 + +0.5 809,059 - -1.8 809,083 + +0.8 809,123 + +1.0 809,353 + +0.5 809,360 + +0.2 809,372 - -0.2 809,382 - +0.2 809,477 + livF Synpcc7942_0815 0.15 -0.3 809,502 + livF Synpcc7942_0815 0.19 +1.4 809,547 - livF Synpcc7942_0815 0.25 -0.7 809,567 + livF Synpcc7942_0815 0.28 -1.8 809,572 + livF Synpcc7942_0815 0.28 -0.2 809,575 - livF Synpcc7942_0815 0.29 -0.2 809,588 + livF Synpcc7942_0815 0.30 +0.2 809,607 + livF Synpcc7942_0815 0.33 +0.9 809,659 - livF Synpcc7942_0815 0.40 +0.4 809,675 + livF Synpcc7942_0815 0.42 -0.2 809,729 + livF Synpcc7942_0815 0.50 -0.5 809,729 + livF Synpcc7942_0815 0.50 -0.1 809,729 + livF Synpcc7942_0815 0.50 +0.2 809,729 + livF Synpcc7942_0815 0.50 -0.3 809,729 + livF Synpcc7942_0815 0.50 -0.5 809,729 + livF Synpcc7942_0815 0.50 +1.0 809,729 + livF Synpcc7942_0815 0.50 +0.4 809,737 - livF Synpcc7942_0815 0.51 -1.0 809,737 - livF Synpcc7942_0815 0.51 +0.1 809,774 + livF Synpcc7942_0815 0.56 -1.8 809,779 + livF Synpcc7942_0815 0.57 +1.1 809,805 - livF Synpcc7942_0815 0.60 -0.2 809,864 + livF Synpcc7942_0815 0.68 +0.4 809,893 - livF Synpcc7942_0815 0.72 +0.1 809,925 - livF Synpcc7942_0815 0.77 -0.5 809,925 - livF Synpcc7942_0815 0.77 -0.0 809,952 + livF Synpcc7942_0815 0.80 -1.5 809,969 + livF Synpcc7942_0815 0.83 -0.9 809,973 + livF Synpcc7942_0815 0.83 -0.7 810,032 + +1.3 810,040 - +0.5 810,071 + +0.9 810,074 - -0.3 810,077 - +0.0 810,092 + -0.8 810,097 - +0.3
Or see this region's nucleotide sequence