Experiment: Light Dark first sampling rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0802 and Synpcc7942_0803 are separated by 2 nucleotides Synpcc7942_0803 and pdxA overlap by 2 nucleotides pdxA and Synpcc7942_0805 overlap by 1 nucleotides Synpcc7942_0805 and Synpcc7942_0806 overlap by 1 nucleotides
Synpcc7942_0802: Synpcc7942_0802 - allophycocyanin alpha chain-like, at 795,917 to 796,504
_0802
Synpcc7942_0803: Synpcc7942_0803 - hypothetical protein, at 796,507 to 797,289
_0803
Synpcc7942_0804: pdxA - 4-hydroxythreonine-4-phosphate dehydrogenase, at 797,288 to 798,349
pdxA
Synpcc7942_0805: Synpcc7942_0805 - hypothetical protein, at 798,349 to 799,095
_0805
Synpcc7942_0806: Synpcc7942_0806 - hypothetical protein, at 799,095 to 799,826
_0806
Position (kb) 797
798
799 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 796.300 kb on + strand, within Synpcc7942_0802 at 796.308 kb on - strand, within Synpcc7942_0802 at 796.323 kb on - strand, within Synpcc7942_0802 at 796.343 kb on + strand, within Synpcc7942_0802 at 796.343 kb on + strand, within Synpcc7942_0802 at 796.387 kb on - strand, within Synpcc7942_0802 at 796.444 kb on - strand, within Synpcc7942_0802 at 796.444 kb on - strand, within Synpcc7942_0802 at 796.446 kb on + strand at 796.465 kb on - strand at 796.478 kb on + strand at 796.486 kb on - strand at 796.488 kb on + strand at 796.488 kb on + strand at 796.488 kb on + strand at 796.488 kb on + strand at 796.488 kb on + strand at 796.488 kb on + strand at 796.496 kb on - strand at 796.496 kb on - strand at 796.496 kb on - strand at 796.496 kb on - strand at 796.496 kb on - strand at 796.496 kb on - strand at 796.496 kb on - strand at 796.511 kb on - strand at 796.522 kb on + strand at 796.523 kb on + strand at 796.523 kb on + strand at 796.525 kb on + strand at 796.525 kb on - strand at 796.529 kb on - strand at 796.531 kb on - strand at 796.562 kb on + strand at 796.582 kb on + strand at 796.585 kb on - strand at 796.683 kb on - strand, within Synpcc7942_0803 at 796.727 kb on + strand, within Synpcc7942_0803 at 796.741 kb on + strand, within Synpcc7942_0803 at 796.784 kb on - strand, within Synpcc7942_0803 at 796.784 kb on - strand at 796.794 kb on - strand, within Synpcc7942_0803 at 796.810 kb on + strand, within Synpcc7942_0803 at 796.821 kb on - strand, within Synpcc7942_0803 at 796.835 kb on - strand, within Synpcc7942_0803 at 796.836 kb on - strand, within Synpcc7942_0803 at 796.837 kb on - strand, within Synpcc7942_0803 at 796.876 kb on + strand, within Synpcc7942_0803 at 796.890 kb on - strand, within Synpcc7942_0803 at 796.901 kb on + strand, within Synpcc7942_0803 at 796.918 kb on - strand, within Synpcc7942_0803 at 796.949 kb on - strand, within Synpcc7942_0803 at 796.982 kb on + strand, within Synpcc7942_0803 at 796.982 kb on + strand, within Synpcc7942_0803 at 796.982 kb on + strand, within Synpcc7942_0803 at 796.982 kb on + strand, within Synpcc7942_0803 at 796.982 kb on + strand, within Synpcc7942_0803 at 796.990 kb on - strand, within Synpcc7942_0803 at 796.990 kb on - strand, within Synpcc7942_0803 at 796.990 kb on - strand, within Synpcc7942_0803 at 796.990 kb on - strand, within Synpcc7942_0803 at 796.990 kb on - strand, within Synpcc7942_0803 at 797.007 kb on - strand, within Synpcc7942_0803 at 797.019 kb on - strand, within Synpcc7942_0803 at 797.019 kb on - strand, within Synpcc7942_0803 at 797.045 kb on + strand, within Synpcc7942_0803 at 797.053 kb on + strand, within Synpcc7942_0803 at 797.053 kb on - strand, within Synpcc7942_0803 at 797.077 kb on - strand, within Synpcc7942_0803 at 797.097 kb on - strand, within Synpcc7942_0803 at 797.105 kb on + strand, within Synpcc7942_0803 at 797.111 kb on - strand, within Synpcc7942_0803 at 797.114 kb on - strand, within Synpcc7942_0803 at 797.117 kb on + strand, within Synpcc7942_0803 at 797.119 kb on - strand, within Synpcc7942_0803 at 797.123 kb on + strand, within Synpcc7942_0803 at 797.158 kb on - strand, within Synpcc7942_0803 at 797.163 kb on + strand, within Synpcc7942_0803 at 797.252 kb on + strand at 797.252 kb on + strand at 797.260 kb on - strand at 797.260 kb on - strand at 797.260 kb on - strand at 797.318 kb on - strand at 798.318 kb on + strand at 798.344 kb on + strand at 798.359 kb on + strand at 798.368 kb on + strand at 798.370 kb on + strand at 798.370 kb on + strand at 798.397 kb on + strand at 798.405 kb on - strand at 798.405 kb on - strand at 798.405 kb on - strand at 798.411 kb on + strand at 798.483 kb on + strand, within Synpcc7942_0805 at 798.502 kb on - strand at 798.538 kb on + strand, within Synpcc7942_0805 at 798.547 kb on - strand, within Synpcc7942_0805 at 798.557 kb on + strand, within Synpcc7942_0805 at 798.557 kb on + strand, within Synpcc7942_0805 at 798.557 kb on + strand, within Synpcc7942_0805 at 798.557 kb on + strand, within Synpcc7942_0805 at 798.557 kb on + strand, within Synpcc7942_0805 at 798.557 kb on + strand, within Synpcc7942_0805 at 798.557 kb on + strand, within Synpcc7942_0805 at 798.557 kb on + strand, within Synpcc7942_0805 at 798.557 kb on - strand, within Synpcc7942_0805 at 798.565 kb on - strand, within Synpcc7942_0805 at 798.565 kb on - strand, within Synpcc7942_0805 at 798.565 kb on - strand, within Synpcc7942_0805 at 798.565 kb on - strand, within Synpcc7942_0805 at 798.565 kb on - strand, within Synpcc7942_0805 at 798.565 kb on - strand, within Synpcc7942_0805 at 798.565 kb on - strand, within Synpcc7942_0805 at 798.581 kb on + strand, within Synpcc7942_0805 at 798.583 kb on + strand, within Synpcc7942_0805 at 798.615 kb on - strand, within Synpcc7942_0805 at 798.629 kb on + strand, within Synpcc7942_0805 at 798.639 kb on + strand, within Synpcc7942_0805 at 798.661 kb on - strand, within Synpcc7942_0805 at 798.661 kb on - strand at 798.709 kb on + strand, within Synpcc7942_0805 at 798.715 kb on - strand, within Synpcc7942_0805 at 798.739 kb on - strand, within Synpcc7942_0805 at 798.743 kb on + strand, within Synpcc7942_0805 at 798.757 kb on + strand, within Synpcc7942_0805 at 798.765 kb on - strand, within Synpcc7942_0805 at 798.776 kb on - strand, within Synpcc7942_0805 at 798.794 kb on + strand, within Synpcc7942_0805 at 798.818 kb on - strand, within Synpcc7942_0805 at 798.838 kb on - strand at 798.841 kb on + strand, within Synpcc7942_0805 at 798.889 kb on + strand, within Synpcc7942_0805 at 798.889 kb on + strand, within Synpcc7942_0805 at 798.897 kb on - strand, within Synpcc7942_0805 at 798.897 kb on - strand, within Synpcc7942_0805 at 798.897 kb on - strand, within Synpcc7942_0805 at 798.897 kb on - strand, within Synpcc7942_0805 at 798.916 kb on + strand, within Synpcc7942_0805 at 798.965 kb on - strand, within Synpcc7942_0805 at 799.059 kb on - strand at 799.079 kb on - strand at 799.123 kb on - strand at 799.132 kb on + strand at 799.209 kb on + strand, within Synpcc7942_0806 at 799.219 kb on + strand, within Synpcc7942_0806 at 799.252 kb on - strand, within Synpcc7942_0806 at 799.257 kb on + strand, within Synpcc7942_0806 at 799.257 kb on + strand, within Synpcc7942_0806 at 799.265 kb on - strand, within Synpcc7942_0806 at 799.265 kb on - strand, within Synpcc7942_0806 at 799.285 kb on - strand, within Synpcc7942_0806 at 799.297 kb on + strand, within Synpcc7942_0806 at 799.302 kb on + strand, within Synpcc7942_0806 at 799.324 kb on + strand, within Synpcc7942_0806 at 799.324 kb on + strand, within Synpcc7942_0806 at 799.332 kb on - strand, within Synpcc7942_0806 at 799.334 kb on + strand, within Synpcc7942_0806 at 799.342 kb on - strand, within Synpcc7942_0806 at 799.344 kb on - strand, within Synpcc7942_0806
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep1 remove 796,300 + Synpcc7942_0802 0.65 -1.2 796,308 - Synpcc7942_0802 0.66 +0.6 796,323 - Synpcc7942_0802 0.69 -0.1 796,343 + Synpcc7942_0802 0.72 +0.3 796,343 + Synpcc7942_0802 0.72 +0.3 796,387 - Synpcc7942_0802 0.80 -0.2 796,444 - Synpcc7942_0802 0.90 -0.4 796,444 - Synpcc7942_0802 0.90 +0.6 796,446 + +0.1 796,465 - -0.6 796,478 + +0.2 796,486 - -1.1 796,488 + -0.4 796,488 + -0.1 796,488 + -0.8 796,488 + -2.4 796,488 + -0.3 796,488 + -0.1 796,496 - -1.3 796,496 - -0.5 796,496 - +0.4 796,496 - +0.4 796,496 - -0.6 796,496 - +0.4 796,496 - -1.3 796,511 - -0.6 796,522 + -0.6 796,523 + +0.1 796,523 + +1.4 796,525 + +0.0 796,525 - +3.6 796,529 - -0.7 796,531 - -1.2 796,562 + +0.8 796,582 + +1.0 796,585 - -1.2 796,683 - Synpcc7942_0803 0.22 +0.7 796,727 + Synpcc7942_0803 0.28 +0.2 796,741 + Synpcc7942_0803 0.30 +1.5 796,784 - Synpcc7942_0803 0.35 +1.1 796,784 - -0.1 796,794 - Synpcc7942_0803 0.37 -0.2 796,810 + Synpcc7942_0803 0.39 +0.0 796,821 - Synpcc7942_0803 0.40 -2.9 796,835 - Synpcc7942_0803 0.42 -0.6 796,836 - Synpcc7942_0803 0.42 +0.4 796,837 - Synpcc7942_0803 0.42 +1.1 796,876 + Synpcc7942_0803 0.47 +0.0 796,890 - Synpcc7942_0803 0.49 -0.7 796,901 + Synpcc7942_0803 0.50 +0.3 796,918 - Synpcc7942_0803 0.52 -0.2 796,949 - Synpcc7942_0803 0.56 +1.0 796,982 + Synpcc7942_0803 0.61 +1.8 796,982 + Synpcc7942_0803 0.61 +0.1 796,982 + Synpcc7942_0803 0.61 -1.2 796,982 + Synpcc7942_0803 0.61 -1.6 796,982 + Synpcc7942_0803 0.61 +1.0 796,990 - Synpcc7942_0803 0.62 +0.0 796,990 - Synpcc7942_0803 0.62 -0.3 796,990 - Synpcc7942_0803 0.62 +0.3 796,990 - Synpcc7942_0803 0.62 +0.5 796,990 - Synpcc7942_0803 0.62 -0.2 797,007 - Synpcc7942_0803 0.64 +0.5 797,019 - Synpcc7942_0803 0.65 +0.5 797,019 - Synpcc7942_0803 0.65 -1.0 797,045 + Synpcc7942_0803 0.69 -0.5 797,053 + Synpcc7942_0803 0.70 +0.0 797,053 - Synpcc7942_0803 0.70 +0.2 797,077 - Synpcc7942_0803 0.73 +1.3 797,097 - Synpcc7942_0803 0.75 -0.2 797,105 + Synpcc7942_0803 0.76 +0.0 797,111 - Synpcc7942_0803 0.77 +0.4 797,114 - Synpcc7942_0803 0.78 -2.6 797,117 + Synpcc7942_0803 0.78 -0.5 797,119 - Synpcc7942_0803 0.78 +0.5 797,123 + Synpcc7942_0803 0.79 +0.0 797,158 - Synpcc7942_0803 0.83 -0.6 797,163 + Synpcc7942_0803 0.84 +0.4 797,252 + -0.3 797,252 + +0.3 797,260 - +0.5 797,260 - -0.3 797,260 - -0.5 797,318 - +0.3 798,318 + +0.5 798,344 + -2.0 798,359 + -0.3 798,368 + +0.5 798,370 + -0.2 798,370 + +0.9 798,397 + +0.1 798,405 - +1.3 798,405 - -0.4 798,405 - -0.7 798,411 + +0.4 798,483 + Synpcc7942_0805 0.18 +0.4 798,502 - +0.0 798,538 + Synpcc7942_0805 0.25 -0.4 798,547 - Synpcc7942_0805 0.27 -0.5 798,557 + Synpcc7942_0805 0.28 +0.0 798,557 + Synpcc7942_0805 0.28 +0.6 798,557 + Synpcc7942_0805 0.28 -0.2 798,557 + Synpcc7942_0805 0.28 +0.2 798,557 + Synpcc7942_0805 0.28 +0.7 798,557 + Synpcc7942_0805 0.28 +0.5 798,557 + Synpcc7942_0805 0.28 -0.5 798,557 + Synpcc7942_0805 0.28 -0.5 798,557 - Synpcc7942_0805 0.28 -1.2 798,565 - Synpcc7942_0805 0.29 +1.2 798,565 - Synpcc7942_0805 0.29 +0.4 798,565 - Synpcc7942_0805 0.29 +0.2 798,565 - Synpcc7942_0805 0.29 -0.3 798,565 - Synpcc7942_0805 0.29 -0.4 798,565 - Synpcc7942_0805 0.29 +0.8 798,565 - Synpcc7942_0805 0.29 -0.7 798,581 + Synpcc7942_0805 0.31 +1.0 798,583 + Synpcc7942_0805 0.31 -0.7 798,615 - Synpcc7942_0805 0.36 +0.2 798,629 + Synpcc7942_0805 0.37 -1.5 798,639 + Synpcc7942_0805 0.39 -0.4 798,661 - Synpcc7942_0805 0.42 +0.5 798,661 - +0.5 798,709 + Synpcc7942_0805 0.48 -0.0 798,715 - Synpcc7942_0805 0.49 -0.6 798,739 - Synpcc7942_0805 0.52 -0.3 798,743 + Synpcc7942_0805 0.53 -0.1 798,757 + Synpcc7942_0805 0.55 -0.1 798,765 - Synpcc7942_0805 0.56 -0.4 798,776 - Synpcc7942_0805 0.57 -1.1 798,794 + Synpcc7942_0805 0.60 -0.5 798,818 - Synpcc7942_0805 0.63 +1.0 798,838 - +0.6 798,841 + Synpcc7942_0805 0.66 +0.8 798,889 + Synpcc7942_0805 0.72 +0.4 798,889 + Synpcc7942_0805 0.72 -0.5 798,897 - Synpcc7942_0805 0.73 +0.4 798,897 - Synpcc7942_0805 0.73 -0.9 798,897 - Synpcc7942_0805 0.73 -1.5 798,897 - Synpcc7942_0805 0.73 -0.1 798,916 + Synpcc7942_0805 0.76 -0.7 798,965 - Synpcc7942_0805 0.82 +0.6 799,059 - -0.3 799,079 - -0.2 799,123 - -0.5 799,132 + +1.0 799,209 + Synpcc7942_0806 0.16 -1.2 799,219 + Synpcc7942_0806 0.17 -0.1 799,252 - Synpcc7942_0806 0.21 +0.2 799,257 + Synpcc7942_0806 0.22 -0.6 799,257 + Synpcc7942_0806 0.22 +0.6 799,265 - Synpcc7942_0806 0.23 -0.2 799,265 - Synpcc7942_0806 0.23 +0.2 799,285 - Synpcc7942_0806 0.26 -0.5 799,297 + Synpcc7942_0806 0.28 -0.6 799,302 + Synpcc7942_0806 0.28 +0.2 799,324 + Synpcc7942_0806 0.31 +0.3 799,324 + Synpcc7942_0806 0.31 +0.5 799,332 - Synpcc7942_0806 0.32 +0.2 799,334 + Synpcc7942_0806 0.33 +0.0 799,342 - Synpcc7942_0806 0.34 -0.6 799,344 - Synpcc7942_0806 0.34 +0.9
Or see this region's nucleotide sequence