Experiment: Light Dark first sampling rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0774 and Synpcc7942_0775 are separated by 138 nucleotides Synpcc7942_0775 and crtE overlap by 1 nucleotides crtE and folD are separated by 42 nucleotides folD and Synpcc7942_0778 are separated by 35 nucleotides
Synpcc7942_0774: Synpcc7942_0774 - esterase, at 766,216 to 767,103
_0774
Synpcc7942_0775: Synpcc7942_0775 - hypothetical protein, at 767,242 to 767,721
_0775
Synpcc7942_0776: crtE - farnesyl-diphosphate synthase, at 767,721 to 768,626
crtE
Synpcc7942_0777: folD - Methenyltetrahydrofolate cyclohydrolase, at 768,669 to 769,538
folD
Synpcc7942_0778: Synpcc7942_0778 - hypothetical protein, at 769,574 to 770,038
_0778
Position (kb) 767
768
769 Strain fitness (log2 ratio) -1
0
1
2 at 766.803 kb on + strand, within Synpcc7942_0774 at 766.806 kb on - strand, within Synpcc7942_0774 at 766.824 kb on + strand, within Synpcc7942_0774 at 766.903 kb on - strand at 766.921 kb on + strand, within Synpcc7942_0774 at 766.923 kb on - strand, within Synpcc7942_0774 at 766.972 kb on - strand, within Synpcc7942_0774 at 766.975 kb on + strand, within Synpcc7942_0774 at 766.983 kb on - strand, within Synpcc7942_0774 at 767.012 kb on + strand, within Synpcc7942_0774 at 767.032 kb on + strand at 767.065 kb on + strand at 767.068 kb on - strand at 767.073 kb on - strand at 767.073 kb on - strand at 767.097 kb on + strand at 767.105 kb on - strand at 767.107 kb on + strand at 767.128 kb on + strand at 767.155 kb on + strand at 767.202 kb on + strand at 767.210 kb on - strand at 767.210 kb on - strand at 767.215 kb on + strand at 767.218 kb on - strand at 767.221 kb on + strand at 767.223 kb on - strand at 767.255 kb on + strand at 767.273 kb on - strand at 767.278 kb on - strand at 767.718 kb on + strand at 769.541 kb on + strand at 769.549 kb on - strand at 769.594 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep1 remove 766,803 + Synpcc7942_0774 0.66 +0.5 766,806 - Synpcc7942_0774 0.66 +0.5 766,824 + Synpcc7942_0774 0.68 +1.2 766,903 - -0.9 766,921 + Synpcc7942_0774 0.79 +1.0 766,923 - Synpcc7942_0774 0.80 -0.8 766,972 - Synpcc7942_0774 0.85 +0.8 766,975 + Synpcc7942_0774 0.85 +0.3 766,983 - Synpcc7942_0774 0.86 +2.0 767,012 + Synpcc7942_0774 0.90 +1.2 767,032 + +0.7 767,065 + +0.1 767,068 - -0.2 767,073 - +1.0 767,073 - +0.5 767,097 + +0.7 767,105 - +0.1 767,107 + -0.4 767,128 + +0.5 767,155 + +0.5 767,202 + -0.2 767,210 - -1.2 767,210 - +0.4 767,215 + +1.1 767,218 - +0.4 767,221 + -0.1 767,223 - -1.2 767,255 + -0.4 767,273 - +0.5 767,278 - -0.1 767,718 + +1.2 769,541 + -0.6 769,549 - +0.5 769,594 - -0.5
Or see this region's nucleotide sequence