Experiment: Light Dark first sampling rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0682 and Synpcc7942_0683 are separated by 36 nucleotides Synpcc7942_0683 and fabG are separated by 57 nucleotides fabG and groEL are separated by 106 nucleotides
Synpcc7942_0682: Synpcc7942_0682 - hypothetical protein, at 675,946 to 676,905
_0682
Synpcc7942_0683: Synpcc7942_0683 - potassium channel protein, at 676,942 to 677,967
_0683
Synpcc7942_0684: fabG - 3-oxoacyl-[acyl-carrier-protein] reductase, at 678,025 to 678,774
fabG
Synpcc7942_0685: groEL - chaperonin GroEL, at 678,881 to 680,548
groEL
Position (kb)
676
677
678 Strain fitness (log2 ratio)
-2
-1
0
1 at 675.948 kb on - strand at 676.881 kb on + strand at 676.926 kb on + strand at 676.945 kb on + strand at 676.967 kb on + strand at 676.967 kb on + strand at 676.967 kb on + strand at 676.975 kb on - strand at 676.975 kb on - strand at 676.989 kb on + strand at 676.989 kb on + strand at 676.992 kb on + strand at 677.004 kb on + strand at 677.040 kb on - strand at 677.056 kb on + strand, within Synpcc7942_0683 at 677.065 kb on + strand, within Synpcc7942_0683 at 677.065 kb on + strand at 677.073 kb on - strand, within Synpcc7942_0683 at 677.073 kb on - strand, within Synpcc7942_0683 at 677.073 kb on - strand, within Synpcc7942_0683 at 677.073 kb on - strand, within Synpcc7942_0683 at 677.073 kb on - strand, within Synpcc7942_0683 at 677.077 kb on + strand, within Synpcc7942_0683 at 677.079 kb on + strand, within Synpcc7942_0683 at 677.082 kb on - strand, within Synpcc7942_0683 at 677.085 kb on - strand, within Synpcc7942_0683 at 677.087 kb on - strand, within Synpcc7942_0683 at 677.143 kb on - strand, within Synpcc7942_0683 at 677.143 kb on - strand, within Synpcc7942_0683 at 677.159 kb on - strand, within Synpcc7942_0683 at 677.211 kb on + strand, within Synpcc7942_0683 at 677.212 kb on + strand, within Synpcc7942_0683 at 677.230 kb on + strand, within Synpcc7942_0683 at 677.234 kb on + strand, within Synpcc7942_0683 at 677.239 kb on - strand, within Synpcc7942_0683 at 677.263 kb on + strand, within Synpcc7942_0683 at 677.289 kb on - strand, within Synpcc7942_0683 at 677.323 kb on + strand, within Synpcc7942_0683 at 677.356 kb on - strand, within Synpcc7942_0683 at 677.419 kb on - strand, within Synpcc7942_0683 at 677.425 kb on - strand, within Synpcc7942_0683 at 677.446 kb on - strand, within Synpcc7942_0683 at 677.476 kb on + strand, within Synpcc7942_0683 at 677.479 kb on - strand, within Synpcc7942_0683 at 677.487 kb on + strand, within Synpcc7942_0683 at 677.489 kb on + strand, within Synpcc7942_0683 at 677.489 kb on + strand, within Synpcc7942_0683 at 677.497 kb on - strand, within Synpcc7942_0683 at 677.498 kb on + strand, within Synpcc7942_0683 at 677.506 kb on - strand at 677.516 kb on + strand, within Synpcc7942_0683 at 677.555 kb on + strand, within Synpcc7942_0683 at 677.555 kb on + strand, within Synpcc7942_0683 at 677.555 kb on + strand, within Synpcc7942_0683 at 677.555 kb on + strand, within Synpcc7942_0683 at 677.563 kb on - strand, within Synpcc7942_0683 at 677.593 kb on - strand, within Synpcc7942_0683 at 677.624 kb on - strand, within Synpcc7942_0683 at 677.642 kb on - strand, within Synpcc7942_0683 at 677.659 kb on - strand, within Synpcc7942_0683 at 677.737 kb on + strand, within Synpcc7942_0683 at 677.761 kb on + strand, within Synpcc7942_0683 at 677.836 kb on - strand, within Synpcc7942_0683 at 677.854 kb on + strand, within Synpcc7942_0683 at 677.858 kb on + strand, within Synpcc7942_0683 at 677.860 kb on + strand, within Synpcc7942_0683 at 677.862 kb on - strand, within Synpcc7942_0683 at 677.863 kb on + strand, within Synpcc7942_0683 at 677.899 kb on + strand at 677.899 kb on - strand at 677.908 kb on + strand at 677.919 kb on + strand at 677.919 kb on + strand at 677.927 kb on - strand at 678.013 kb on - strand at 678.030 kb on - strand at 678.030 kb on - strand at 678.768 kb on + strand at 678.768 kb on + strand at 678.768 kb on + strand at 678.776 kb on - strand at 678.806 kb on + strand at 678.806 kb on + strand at 678.812 kb on - strand at 678.814 kb on - strand at 678.829 kb on - strand at 678.854 kb on - strand at 678.857 kb on + strand at 678.859 kb on + strand at 678.867 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep1 remove 675,948 - +0.3 676,881 + -0.6 676,926 + -0.5 676,945 + -1.4 676,967 + -1.7 676,967 + -0.9 676,967 + -1.1 676,975 - -1.4 676,975 - -0.9 676,989 + -2.0 676,989 + -2.3 676,992 + -1.5 677,004 + -1.2 677,040 - -1.3 677,056 + Synpcc7942_0683 0.11 -1.3 677,065 + Synpcc7942_0683 0.12 -1.6 677,065 + -1.9 677,073 - Synpcc7942_0683 0.13 -0.2 677,073 - Synpcc7942_0683 0.13 -0.8 677,073 - Synpcc7942_0683 0.13 +1.1 677,073 - Synpcc7942_0683 0.13 -0.3 677,073 - Synpcc7942_0683 0.13 -0.3 677,077 + Synpcc7942_0683 0.13 -1.2 677,079 + Synpcc7942_0683 0.13 -1.7 677,082 - Synpcc7942_0683 0.14 -0.7 677,085 - Synpcc7942_0683 0.14 -2.3 677,087 - Synpcc7942_0683 0.14 -0.3 677,143 - Synpcc7942_0683 0.20 -1.2 677,143 - Synpcc7942_0683 0.20 -1.5 677,159 - Synpcc7942_0683 0.21 -0.1 677,211 + Synpcc7942_0683 0.26 -0.3 677,212 + Synpcc7942_0683 0.26 +0.0 677,230 + Synpcc7942_0683 0.28 -0.7 677,234 + Synpcc7942_0683 0.28 -1.3 677,239 - Synpcc7942_0683 0.29 -1.8 677,263 + Synpcc7942_0683 0.31 -1.0 677,289 - Synpcc7942_0683 0.34 +1.0 677,323 + Synpcc7942_0683 0.37 -0.5 677,356 - Synpcc7942_0683 0.40 -0.9 677,419 - Synpcc7942_0683 0.46 -2.5 677,425 - Synpcc7942_0683 0.47 -1.3 677,446 - Synpcc7942_0683 0.49 -0.2 677,476 + Synpcc7942_0683 0.52 +0.0 677,479 - Synpcc7942_0683 0.52 -1.5 677,487 + Synpcc7942_0683 0.53 -0.4 677,489 + Synpcc7942_0683 0.53 -1.9 677,489 + Synpcc7942_0683 0.53 -1.3 677,497 - Synpcc7942_0683 0.54 -1.5 677,498 + Synpcc7942_0683 0.54 -2.2 677,506 - -0.9 677,516 + Synpcc7942_0683 0.56 -0.5 677,555 + Synpcc7942_0683 0.60 -1.2 677,555 + Synpcc7942_0683 0.60 -0.3 677,555 + Synpcc7942_0683 0.60 -0.5 677,555 + Synpcc7942_0683 0.60 -0.2 677,563 - Synpcc7942_0683 0.61 -0.9 677,593 - Synpcc7942_0683 0.63 +0.7 677,624 - Synpcc7942_0683 0.66 -0.3 677,642 - Synpcc7942_0683 0.68 -1.2 677,659 - Synpcc7942_0683 0.70 -1.4 677,737 + Synpcc7942_0683 0.77 -0.3 677,761 + Synpcc7942_0683 0.80 -0.7 677,836 - Synpcc7942_0683 0.87 -0.8 677,854 + Synpcc7942_0683 0.89 -1.9 677,858 + Synpcc7942_0683 0.89 -1.2 677,860 + Synpcc7942_0683 0.89 -0.7 677,862 - Synpcc7942_0683 0.90 -2.3 677,863 + Synpcc7942_0683 0.90 -0.3 677,899 + -1.2 677,899 - -0.7 677,908 + -0.2 677,919 + -1.7 677,919 + -2.4 677,927 - -0.6 678,013 - -0.0 678,030 - -0.3 678,030 - +1.7 678,768 + +0.7 678,768 + -0.8 678,768 + -0.3 678,776 - +0.1 678,806 + +0.8 678,806 + +0.4 678,812 - +0.0 678,814 - +0.6 678,829 - -1.6 678,854 - +0.4 678,857 + +0.6 678,859 + +0.1 678,867 + +0.1
Or see this region's nucleotide sequence