Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0683

Experiment: Light Dark first sampling rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSynpcc7942_0682 and Synpcc7942_0683 are separated by 36 nucleotidesSynpcc7942_0683 and fabG are separated by 57 nucleotidesfabG and groEL are separated by 106 nucleotides Synpcc7942_0682: Synpcc7942_0682 - hypothetical protein, at 675,946 to 676,905 _0682 Synpcc7942_0683: Synpcc7942_0683 - potassium channel protein, at 676,942 to 677,967 _0683 Synpcc7942_0684: fabG - 3-oxoacyl-[acyl-carrier-protein] reductase, at 678,025 to 678,774 fabG Synpcc7942_0685: groEL - chaperonin GroEL, at 678,881 to 680,548 groEL Position (kb) 676 677 678Strain fitness (log2 ratio) -2 -1 0 1at 675.948 kb on - strandat 676.881 kb on + strandat 676.926 kb on + strandat 676.945 kb on + strandat 676.967 kb on + strandat 676.967 kb on + strandat 676.967 kb on + strandat 676.975 kb on - strandat 676.975 kb on - strandat 676.989 kb on + strandat 676.989 kb on + strandat 676.992 kb on + strandat 677.004 kb on + strandat 677.040 kb on - strandat 677.056 kb on + strand, within Synpcc7942_0683at 677.065 kb on + strand, within Synpcc7942_0683at 677.065 kb on + strandat 677.073 kb on - strand, within Synpcc7942_0683at 677.073 kb on - strand, within Synpcc7942_0683at 677.073 kb on - strand, within Synpcc7942_0683at 677.073 kb on - strand, within Synpcc7942_0683at 677.073 kb on - strand, within Synpcc7942_0683at 677.077 kb on + strand, within Synpcc7942_0683at 677.079 kb on + strand, within Synpcc7942_0683at 677.082 kb on - strand, within Synpcc7942_0683at 677.085 kb on - strand, within Synpcc7942_0683at 677.087 kb on - strand, within Synpcc7942_0683at 677.143 kb on - strand, within Synpcc7942_0683at 677.143 kb on - strand, within Synpcc7942_0683at 677.159 kb on - strand, within Synpcc7942_0683at 677.211 kb on + strand, within Synpcc7942_0683at 677.212 kb on + strand, within Synpcc7942_0683at 677.230 kb on + strand, within Synpcc7942_0683at 677.234 kb on + strand, within Synpcc7942_0683at 677.239 kb on - strand, within Synpcc7942_0683at 677.263 kb on + strand, within Synpcc7942_0683at 677.289 kb on - strand, within Synpcc7942_0683at 677.323 kb on + strand, within Synpcc7942_0683at 677.356 kb on - strand, within Synpcc7942_0683at 677.419 kb on - strand, within Synpcc7942_0683at 677.425 kb on - strand, within Synpcc7942_0683at 677.446 kb on - strand, within Synpcc7942_0683at 677.476 kb on + strand, within Synpcc7942_0683at 677.479 kb on - strand, within Synpcc7942_0683at 677.487 kb on + strand, within Synpcc7942_0683at 677.489 kb on + strand, within Synpcc7942_0683at 677.489 kb on + strand, within Synpcc7942_0683at 677.497 kb on - strand, within Synpcc7942_0683at 677.498 kb on + strand, within Synpcc7942_0683at 677.506 kb on - strandat 677.516 kb on + strand, within Synpcc7942_0683at 677.555 kb on + strand, within Synpcc7942_0683at 677.555 kb on + strand, within Synpcc7942_0683at 677.555 kb on + strand, within Synpcc7942_0683at 677.555 kb on + strand, within Synpcc7942_0683at 677.563 kb on - strand, within Synpcc7942_0683at 677.593 kb on - strand, within Synpcc7942_0683at 677.624 kb on - strand, within Synpcc7942_0683at 677.642 kb on - strand, within Synpcc7942_0683at 677.659 kb on - strand, within Synpcc7942_0683at 677.737 kb on + strand, within Synpcc7942_0683at 677.761 kb on + strand, within Synpcc7942_0683at 677.836 kb on - strand, within Synpcc7942_0683at 677.854 kb on + strand, within Synpcc7942_0683at 677.858 kb on + strand, within Synpcc7942_0683at 677.860 kb on + strand, within Synpcc7942_0683at 677.862 kb on - strand, within Synpcc7942_0683at 677.863 kb on + strand, within Synpcc7942_0683at 677.899 kb on + strandat 677.899 kb on - strandat 677.908 kb on + strandat 677.919 kb on + strandat 677.919 kb on + strandat 677.927 kb on - strandat 678.013 kb on - strandat 678.030 kb on - strandat 678.030 kb on - strandat 678.768 kb on + strandat 678.768 kb on + strandat 678.768 kb on + strandat 678.776 kb on - strandat 678.806 kb on + strandat 678.806 kb on + strandat 678.812 kb on - strandat 678.814 kb on - strandat 678.829 kb on - strandat 678.854 kb on - strandat 678.857 kb on + strandat 678.859 kb on + strandat 678.867 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Light Dark first sampling rep1
remove
675,948 - +0.3
676,881 + -0.6
676,926 + -0.5
676,945 + -1.4
676,967 + -1.7
676,967 + -0.9
676,967 + -1.1
676,975 - -1.4
676,975 - -0.9
676,989 + -2.0
676,989 + -2.3
676,992 + -1.5
677,004 + -1.2
677,040 - -1.3
677,056 + Synpcc7942_0683 0.11 -1.3
677,065 + Synpcc7942_0683 0.12 -1.6
677,065 + -1.9
677,073 - Synpcc7942_0683 0.13 -0.2
677,073 - Synpcc7942_0683 0.13 -0.8
677,073 - Synpcc7942_0683 0.13 +1.1
677,073 - Synpcc7942_0683 0.13 -0.3
677,073 - Synpcc7942_0683 0.13 -0.3
677,077 + Synpcc7942_0683 0.13 -1.2
677,079 + Synpcc7942_0683 0.13 -1.7
677,082 - Synpcc7942_0683 0.14 -0.7
677,085 - Synpcc7942_0683 0.14 -2.3
677,087 - Synpcc7942_0683 0.14 -0.3
677,143 - Synpcc7942_0683 0.20 -1.2
677,143 - Synpcc7942_0683 0.20 -1.5
677,159 - Synpcc7942_0683 0.21 -0.1
677,211 + Synpcc7942_0683 0.26 -0.3
677,212 + Synpcc7942_0683 0.26 +0.0
677,230 + Synpcc7942_0683 0.28 -0.7
677,234 + Synpcc7942_0683 0.28 -1.3
677,239 - Synpcc7942_0683 0.29 -1.8
677,263 + Synpcc7942_0683 0.31 -1.0
677,289 - Synpcc7942_0683 0.34 +1.0
677,323 + Synpcc7942_0683 0.37 -0.5
677,356 - Synpcc7942_0683 0.40 -0.9
677,419 - Synpcc7942_0683 0.46 -2.5
677,425 - Synpcc7942_0683 0.47 -1.3
677,446 - Synpcc7942_0683 0.49 -0.2
677,476 + Synpcc7942_0683 0.52 +0.0
677,479 - Synpcc7942_0683 0.52 -1.5
677,487 + Synpcc7942_0683 0.53 -0.4
677,489 + Synpcc7942_0683 0.53 -1.9
677,489 + Synpcc7942_0683 0.53 -1.3
677,497 - Synpcc7942_0683 0.54 -1.5
677,498 + Synpcc7942_0683 0.54 -2.2
677,506 - -0.9
677,516 + Synpcc7942_0683 0.56 -0.5
677,555 + Synpcc7942_0683 0.60 -1.2
677,555 + Synpcc7942_0683 0.60 -0.3
677,555 + Synpcc7942_0683 0.60 -0.5
677,555 + Synpcc7942_0683 0.60 -0.2
677,563 - Synpcc7942_0683 0.61 -0.9
677,593 - Synpcc7942_0683 0.63 +0.7
677,624 - Synpcc7942_0683 0.66 -0.3
677,642 - Synpcc7942_0683 0.68 -1.2
677,659 - Synpcc7942_0683 0.70 -1.4
677,737 + Synpcc7942_0683 0.77 -0.3
677,761 + Synpcc7942_0683 0.80 -0.7
677,836 - Synpcc7942_0683 0.87 -0.8
677,854 + Synpcc7942_0683 0.89 -1.9
677,858 + Synpcc7942_0683 0.89 -1.2
677,860 + Synpcc7942_0683 0.89 -0.7
677,862 - Synpcc7942_0683 0.90 -2.3
677,863 + Synpcc7942_0683 0.90 -0.3
677,899 + -1.2
677,899 - -0.7
677,908 + -0.2
677,919 + -1.7
677,919 + -2.4
677,927 - -0.6
678,013 - -0.0
678,030 - -0.3
678,030 - +1.7
678,768 + +0.7
678,768 + -0.8
678,768 + -0.3
678,776 - +0.1
678,806 + +0.8
678,806 + +0.4
678,812 - +0.0
678,814 - +0.6
678,829 - -1.6
678,854 - +0.4
678,857 + +0.6
678,859 + +0.1
678,867 + +0.1

Or see this region's nucleotide sequence