Experiment: Light Dark first sampling rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0664 and Synpcc7942_0665 are separated by 7 nucleotides Synpcc7942_0665 and Synpcc7942_0666 are separated by 162 nucleotides Synpcc7942_0666 and Synpcc7942_0667 are separated by 223 nucleotides Synpcc7942_0667 and Synpcc7942_0668 are separated by 9 nucleotides Synpcc7942_0668 and mpg are separated by 93 nucleotides
Synpcc7942_0664: Synpcc7942_0664 - Cyclic nucleotide-binding, at 660,875 to 662,224
_0664
Synpcc7942_0665: Synpcc7942_0665 - hypothetical protein, at 662,232 to 662,978
_0665
Synpcc7942_0666: Synpcc7942_0666 - Heat shock protein DnaJ-like, at 663,141 to 663,761
_0666
Synpcc7942_0667: Synpcc7942_0667 - hypothetical protein, at 663,985 to 664,296
_0667
Synpcc7942_0668: Synpcc7942_0668 - hypothetical protein, at 664,306 to 664,446
_0668
Synpcc7942_0669: mpg - DNA-3-methyladenine glycosylase, at 664,540 to 665,124
mpg
Position (kb) 663
664 Strain fitness (log2 ratio) -2
-1
0
1
2 at 662.155 kb on - strand at 662.155 kb on - strand at 662.173 kb on + strand at 662.198 kb on + strand at 662.265 kb on + strand at 662.269 kb on + strand at 662.324 kb on - strand, within Synpcc7942_0665 at 662.350 kb on + strand, within Synpcc7942_0665 at 662.350 kb on + strand at 662.355 kb on - strand, within Synpcc7942_0665 at 662.394 kb on + strand, within Synpcc7942_0665 at 662.395 kb on + strand, within Synpcc7942_0665 at 662.402 kb on - strand, within Synpcc7942_0665 at 662.402 kb on - strand, within Synpcc7942_0665 at 662.429 kb on - strand, within Synpcc7942_0665 at 662.430 kb on - strand, within Synpcc7942_0665 at 662.430 kb on - strand, within Synpcc7942_0665 at 662.432 kb on + strand, within Synpcc7942_0665 at 662.445 kb on - strand, within Synpcc7942_0665 at 662.497 kb on + strand, within Synpcc7942_0665 at 662.512 kb on - strand, within Synpcc7942_0665 at 662.515 kb on + strand, within Synpcc7942_0665 at 662.515 kb on + strand, within Synpcc7942_0665 at 662.523 kb on - strand, within Synpcc7942_0665 at 662.534 kb on + strand, within Synpcc7942_0665 at 662.534 kb on + strand, within Synpcc7942_0665 at 662.542 kb on - strand, within Synpcc7942_0665 at 662.549 kb on + strand, within Synpcc7942_0665 at 662.571 kb on + strand, within Synpcc7942_0665 at 662.573 kb on + strand, within Synpcc7942_0665 at 662.573 kb on + strand, within Synpcc7942_0665 at 662.573 kb on + strand, within Synpcc7942_0665 at 662.581 kb on - strand, within Synpcc7942_0665 at 662.581 kb on - strand, within Synpcc7942_0665 at 662.600 kb on - strand, within Synpcc7942_0665 at 662.610 kb on - strand, within Synpcc7942_0665 at 662.622 kb on + strand, within Synpcc7942_0665 at 662.638 kb on + strand at 662.672 kb on + strand at 662.680 kb on - strand, within Synpcc7942_0665 at 662.703 kb on - strand, within Synpcc7942_0665 at 662.736 kb on - strand, within Synpcc7942_0665 at 662.769 kb on + strand, within Synpcc7942_0665 at 662.776 kb on + strand, within Synpcc7942_0665 at 662.776 kb on + strand, within Synpcc7942_0665 at 662.784 kb on - strand, within Synpcc7942_0665 at 662.803 kb on + strand, within Synpcc7942_0665 at 662.810 kb on - strand, within Synpcc7942_0665 at 662.821 kb on - strand, within Synpcc7942_0665 at 662.828 kb on + strand, within Synpcc7942_0665 at 662.868 kb on + strand, within Synpcc7942_0665 at 662.889 kb on + strand, within Synpcc7942_0665 at 662.894 kb on + strand, within Synpcc7942_0665 at 662.894 kb on + strand, within Synpcc7942_0665 at 662.899 kb on - strand, within Synpcc7942_0665 at 662.899 kb on - strand, within Synpcc7942_0665 at 662.902 kb on - strand, within Synpcc7942_0665 at 662.928 kb on - strand at 662.930 kb on + strand at 662.930 kb on + strand at 662.938 kb on - strand at 662.965 kb on - strand at 662.965 kb on - strand at 662.998 kb on - strand at 663.112 kb on + strand at 663.119 kb on + strand at 663.128 kb on - strand at 663.153 kb on + strand at 663.166 kb on - strand at 663.185 kb on + strand at 663.254 kb on + strand, within Synpcc7942_0666 at 663.280 kb on + strand, within Synpcc7942_0666 at 663.310 kb on - strand, within Synpcc7942_0666 at 663.332 kb on + strand, within Synpcc7942_0666 at 663.382 kb on + strand, within Synpcc7942_0666 at 663.389 kb on + strand, within Synpcc7942_0666 at 663.389 kb on - strand, within Synpcc7942_0666 at 663.390 kb on - strand, within Synpcc7942_0666 at 663.390 kb on - strand, within Synpcc7942_0666 at 663.419 kb on - strand, within Synpcc7942_0666 at 663.468 kb on - strand, within Synpcc7942_0666 at 663.501 kb on - strand, within Synpcc7942_0666 at 663.524 kb on + strand, within Synpcc7942_0666 at 663.533 kb on - strand, within Synpcc7942_0666 at 663.576 kb on - strand, within Synpcc7942_0666 at 663.577 kb on + strand, within Synpcc7942_0666 at 663.580 kb on + strand, within Synpcc7942_0666 at 663.598 kb on + strand, within Synpcc7942_0666 at 663.599 kb on - strand, within Synpcc7942_0666 at 663.613 kb on + strand, within Synpcc7942_0666 at 663.621 kb on - strand, within Synpcc7942_0666 at 663.685 kb on + strand, within Synpcc7942_0666 at 663.688 kb on - strand at 663.697 kb on + strand, within Synpcc7942_0666 at 663.700 kb on - strand at 663.763 kb on - strand at 663.802 kb on + strand at 663.810 kb on - strand at 663.810 kb on - strand at 663.812 kb on - strand at 663.817 kb on + strand at 663.817 kb on + strand at 663.827 kb on + strand at 663.835 kb on - strand at 663.857 kb on - strand at 663.857 kb on - strand at 663.860 kb on - strand at 663.882 kb on - strand at 663.882 kb on - strand at 663.897 kb on + strand at 663.897 kb on + strand at 663.933 kb on + strand at 663.941 kb on - strand at 663.969 kb on + strand at 663.977 kb on - strand at 664.011 kb on + strand at 664.038 kb on - strand, within Synpcc7942_0667 at 664.046 kb on - strand, within Synpcc7942_0667 at 664.061 kb on + strand, within Synpcc7942_0667 at 664.100 kb on + strand, within Synpcc7942_0667 at 664.172 kb on + strand, within Synpcc7942_0667 at 664.258 kb on + strand, within Synpcc7942_0667 at 664.306 kb on + strand at 664.384 kb on + strand, within Synpcc7942_0668 at 664.384 kb on + strand, within Synpcc7942_0668 at 664.384 kb on + strand, within Synpcc7942_0668 at 664.384 kb on + strand, within Synpcc7942_0668 at 664.392 kb on - strand, within Synpcc7942_0668 at 664.393 kb on - strand, within Synpcc7942_0668 at 664.454 kb on + strand at 664.454 kb on + strand at 664.454 kb on + strand at 664.462 kb on - strand at 664.473 kb on + strand at 664.478 kb on + strand at 664.577 kb on + strand at 664.600 kb on + strand, within mpg at 664.618 kb on - strand, within mpg at 664.636 kb on + strand, within mpg at 664.660 kb on + strand, within mpg at 664.695 kb on - strand at 664.697 kb on + strand, within mpg at 664.697 kb on + strand, within mpg at 664.699 kb on + strand, within mpg at 664.705 kb on - strand, within mpg at 664.720 kb on + strand, within mpg at 664.745 kb on + strand, within mpg at 664.755 kb on + strand, within mpg at 664.755 kb on + strand, within mpg at 664.755 kb on + strand, within mpg at 664.755 kb on + strand, within mpg
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep1 remove 662,155 - -0.1 662,155 - +0.6 662,173 + -0.1 662,198 + -2.5 662,265 + -1.2 662,269 + -0.1 662,324 - Synpcc7942_0665 0.12 +0.0 662,350 + Synpcc7942_0665 0.16 +0.5 662,350 + +0.7 662,355 - Synpcc7942_0665 0.16 -0.1 662,394 + Synpcc7942_0665 0.22 -0.8 662,395 + Synpcc7942_0665 0.22 -0.1 662,402 - Synpcc7942_0665 0.23 +0.2 662,402 - Synpcc7942_0665 0.23 +1.0 662,429 - Synpcc7942_0665 0.26 -0.9 662,430 - Synpcc7942_0665 0.27 -0.3 662,430 - Synpcc7942_0665 0.27 -0.1 662,432 + Synpcc7942_0665 0.27 -0.7 662,445 - Synpcc7942_0665 0.29 +0.3 662,497 + Synpcc7942_0665 0.35 -0.5 662,512 - Synpcc7942_0665 0.37 +0.2 662,515 + Synpcc7942_0665 0.38 +1.2 662,515 + Synpcc7942_0665 0.38 +1.2 662,523 - Synpcc7942_0665 0.39 -0.3 662,534 + Synpcc7942_0665 0.40 -0.4 662,534 + Synpcc7942_0665 0.40 +0.5 662,542 - Synpcc7942_0665 0.41 -0.5 662,549 + Synpcc7942_0665 0.42 +0.1 662,571 + Synpcc7942_0665 0.45 +1.2 662,573 + Synpcc7942_0665 0.46 +0.7 662,573 + Synpcc7942_0665 0.46 +0.7 662,573 + Synpcc7942_0665 0.46 -0.8 662,581 - Synpcc7942_0665 0.47 +0.3 662,581 - Synpcc7942_0665 0.47 -0.0 662,600 - Synpcc7942_0665 0.49 +0.7 662,610 - Synpcc7942_0665 0.51 +0.6 662,622 + Synpcc7942_0665 0.52 +0.8 662,638 + +0.7 662,672 + -0.7 662,680 - Synpcc7942_0665 0.60 +0.4 662,703 - Synpcc7942_0665 0.63 -0.3 662,736 - Synpcc7942_0665 0.67 -0.1 662,769 + Synpcc7942_0665 0.72 +0.2 662,776 + Synpcc7942_0665 0.73 +0.3 662,776 + Synpcc7942_0665 0.73 +0.4 662,784 - Synpcc7942_0665 0.74 -0.2 662,803 + Synpcc7942_0665 0.76 +1.1 662,810 - Synpcc7942_0665 0.77 -0.6 662,821 - Synpcc7942_0665 0.79 +0.3 662,828 + Synpcc7942_0665 0.80 -0.1 662,868 + Synpcc7942_0665 0.85 -0.3 662,889 + Synpcc7942_0665 0.88 -0.4 662,894 + Synpcc7942_0665 0.89 +0.7 662,894 + Synpcc7942_0665 0.89 -0.2 662,899 - Synpcc7942_0665 0.89 -0.5 662,899 - Synpcc7942_0665 0.89 +0.9 662,902 - Synpcc7942_0665 0.90 +0.2 662,928 - -0.1 662,930 + +0.8 662,930 + -0.3 662,938 - +0.1 662,965 - +1.2 662,965 - +0.9 662,998 - +0.1 663,112 + -0.7 663,119 + -1.4 663,128 - +0.6 663,153 + -0.5 663,166 - +0.6 663,185 + +0.6 663,254 + Synpcc7942_0666 0.18 -1.7 663,280 + Synpcc7942_0666 0.22 +0.0 663,310 - Synpcc7942_0666 0.27 -0.8 663,332 + Synpcc7942_0666 0.31 -0.3 663,382 + Synpcc7942_0666 0.39 +1.0 663,389 + Synpcc7942_0666 0.40 -1.8 663,389 - Synpcc7942_0666 0.40 -0.1 663,390 - Synpcc7942_0666 0.40 -0.2 663,390 - Synpcc7942_0666 0.40 -1.2 663,419 - Synpcc7942_0666 0.45 +0.8 663,468 - Synpcc7942_0666 0.53 +1.2 663,501 - Synpcc7942_0666 0.58 +0.6 663,524 + Synpcc7942_0666 0.62 +0.2 663,533 - Synpcc7942_0666 0.63 +0.5 663,576 - Synpcc7942_0666 0.70 +0.3 663,577 + Synpcc7942_0666 0.70 +0.2 663,580 + Synpcc7942_0666 0.71 -0.2 663,598 + Synpcc7942_0666 0.74 +0.6 663,599 - Synpcc7942_0666 0.74 +0.3 663,613 + Synpcc7942_0666 0.76 +0.2 663,621 - Synpcc7942_0666 0.77 +0.2 663,685 + Synpcc7942_0666 0.88 +1.1 663,688 - +1.2 663,697 + Synpcc7942_0666 0.90 +0.2 663,700 - -0.2 663,763 - +0.2 663,802 + +2.3 663,810 - -1.1 663,810 - -0.1 663,812 - -0.7 663,817 + -0.9 663,817 + +0.6 663,827 + +0.2 663,835 - +0.9 663,857 - -1.0 663,857 - +0.6 663,860 - +0.7 663,882 - -0.6 663,882 - -0.5 663,897 + +0.1 663,897 + +1.5 663,933 + -0.2 663,941 - +0.6 663,969 + +0.3 663,977 - +1.5 664,011 + -0.9 664,038 - Synpcc7942_0667 0.17 +1.5 664,046 - Synpcc7942_0667 0.20 +0.6 664,061 + Synpcc7942_0667 0.24 -0.7 664,100 + Synpcc7942_0667 0.37 +0.6 664,172 + Synpcc7942_0667 0.60 +0.5 664,258 + Synpcc7942_0667 0.88 -0.0 664,306 + +0.1 664,384 + Synpcc7942_0668 0.55 +0.1 664,384 + Synpcc7942_0668 0.55 -0.4 664,384 + Synpcc7942_0668 0.55 +1.4 664,384 + Synpcc7942_0668 0.55 -0.9 664,392 - Synpcc7942_0668 0.61 -0.7 664,393 - Synpcc7942_0668 0.62 +0.1 664,454 + +0.6 664,454 + -1.5 664,454 + +0.7 664,462 - +0.5 664,473 + +0.0 664,478 + -1.4 664,577 + -0.9 664,600 + mpg Synpcc7942_0669 0.10 +0.9 664,618 - mpg Synpcc7942_0669 0.13 +0.7 664,636 + mpg Synpcc7942_0669 0.16 +0.6 664,660 + mpg Synpcc7942_0669 0.21 +0.2 664,695 - +1.2 664,697 + mpg Synpcc7942_0669 0.27 -0.9 664,697 + mpg Synpcc7942_0669 0.27 +0.1 664,699 + mpg Synpcc7942_0669 0.27 -0.7 664,705 - mpg Synpcc7942_0669 0.28 -1.1 664,720 + mpg Synpcc7942_0669 0.31 +0.8 664,745 + mpg Synpcc7942_0669 0.35 +0.4 664,755 + mpg Synpcc7942_0669 0.37 -1.9 664,755 + mpg Synpcc7942_0669 0.37 +0.6 664,755 + mpg Synpcc7942_0669 0.37 +0.0 664,755 + mpg Synpcc7942_0669 0.37 -2.1
Or see this region's nucleotide sequence