Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0632

Experiment: Light Dark first sampling rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0630 and rplL are separated by 301 nucleotidesrplL and rplJ are separated by 59 nucleotidesrplJ and rplA are separated by 228 nucleotides Synpcc7942_0630: Synpcc7942_0630 - hypothetical protein, at 622,432 to 623,574 _0630 Synpcc7942_0631: rplL - 50S ribosomal protein L7/L12, at 623,876 to 624,262 rplL Synpcc7942_0632: rplJ - 50S ribosomal protein L10, at 624,322 to 624,849 rplJ Synpcc7942_0633: rplA - 50S ribosomal protein L1, at 625,078 to 625,791 rplA Position (kb) 624 625Strain fitness (log2 ratio) -1 0 1at 623.330 kb on + strand, within Synpcc7942_0630at 623.398 kb on + strand, within Synpcc7942_0630at 623.403 kb on + strand, within Synpcc7942_0630at 623.493 kb on - strandat 623.512 kb on + strandat 623.514 kb on - strandat 623.555 kb on + strandat 623.599 kb on + strandat 623.599 kb on + strandat 623.607 kb on - strandat 623.607 kb on - strandat 623.717 kb on - strandat 623.764 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Light Dark first sampling rep1
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623,330 + Synpcc7942_0630 0.79 +0.0
623,398 + Synpcc7942_0630 0.85 +0.5
623,403 + Synpcc7942_0630 0.85 -0.9
623,493 - -0.5
623,512 + -0.2
623,514 - -0.4
623,555 + +0.3
623,599 + +0.8
623,599 + +0.5
623,607 - -1.0
623,607 - -0.2
623,717 - -0.4
623,764 + +1.6

Or see this region's nucleotide sequence