Experiment: Light Dark first sampling rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt trxB and ldpA are separated by 9 nucleotides ldpA and ycf45 overlap by 1 nucleotides
Synpcc7942_0623: trxB - thioredoxin reductase, at 613,972 to 615,351
trxB
Synpcc7942_0624: ldpA - light dependent period, at 615,361 to 616,419
ldpA
Synpcc7942_0625: ycf45 - Single-stranded nucleic acid binding R3H, at 616,419 to 618,185
ycf45
Position (kb) 615
616
617 Strain fitness (log2 ratio) -2
-1
0
1
2 at 614.394 kb on + strand at 614.606 kb on - strand, within trxB at 614.610 kb on + strand, within trxB at 614.622 kb on + strand, within trxB at 614.630 kb on - strand, within trxB at 614.630 kb on - strand, within trxB at 614.630 kb on - strand, within trxB at 614.630 kb on - strand, within trxB at 614.780 kb on - strand, within trxB at 614.821 kb on + strand, within trxB at 614.899 kb on - strand, within trxB at 614.966 kb on - strand, within trxB at 615.004 kb on + strand, within trxB at 615.034 kb on - strand, within trxB at 615.044 kb on - strand, within trxB at 615.046 kb on - strand, within trxB at 615.048 kb on + strand, within trxB at 615.048 kb on + strand, within trxB at 615.095 kb on - strand, within trxB at 615.097 kb on + strand, within trxB at 615.130 kb on - strand, within trxB at 615.166 kb on + strand, within trxB at 615.174 kb on - strand, within trxB at 615.174 kb on - strand, within trxB at 615.242 kb on + strand at 615.261 kb on - strand at 615.264 kb on + strand at 615.264 kb on + strand at 615.344 kb on + strand at 615.351 kb on + strand at 615.353 kb on + strand at 615.353 kb on + strand at 615.386 kb on + strand at 615.396 kb on - strand at 615.404 kb on + strand at 615.467 kb on + strand, within ldpA at 615.467 kb on + strand, within ldpA at 615.474 kb on - strand, within ldpA at 615.475 kb on - strand, within ldpA at 615.519 kb on + strand, within ldpA at 615.593 kb on + strand, within ldpA at 615.593 kb on + strand, within ldpA at 615.658 kb on - strand, within ldpA at 615.662 kb on + strand, within ldpA at 615.670 kb on - strand, within ldpA at 615.670 kb on - strand, within ldpA at 615.670 kb on - strand, within ldpA at 615.751 kb on + strand, within ldpA at 615.786 kb on + strand, within ldpA at 615.902 kb on + strand, within ldpA at 615.975 kb on + strand, within ldpA at 615.983 kb on - strand, within ldpA at 616.075 kb on - strand, within ldpA at 616.089 kb on - strand, within ldpA at 616.093 kb on + strand, within ldpA at 616.195 kb on + strand, within ldpA at 616.321 kb on + strand at 616.361 kb on + strand at 616.361 kb on + strand at 616.369 kb on - strand at 616.371 kb on + strand at 616.376 kb on + strand at 616.413 kb on + strand at 616.420 kb on + strand at 616.421 kb on - strand at 616.493 kb on + strand at 616.531 kb on + strand at 616.585 kb on + strand at 616.605 kb on - strand, within ycf45 at 616.621 kb on + strand, within ycf45 at 616.654 kb on + strand, within ycf45 at 616.659 kb on + strand, within ycf45 at 616.720 kb on + strand, within ycf45 at 616.728 kb on - strand, within ycf45 at 616.744 kb on - strand, within ycf45 at 616.744 kb on - strand, within ycf45 at 616.755 kb on + strand at 616.788 kb on - strand, within ycf45 at 616.790 kb on + strand, within ycf45 at 616.800 kb on + strand, within ycf45 at 616.808 kb on - strand, within ycf45 at 616.840 kb on - strand, within ycf45 at 616.840 kb on - strand, within ycf45 at 616.865 kb on - strand, within ycf45 at 616.867 kb on + strand, within ycf45 at 616.885 kb on + strand, within ycf45 at 616.885 kb on + strand, within ycf45 at 616.918 kb on + strand, within ycf45 at 616.928 kb on + strand, within ycf45 at 616.936 kb on - strand, within ycf45 at 616.936 kb on - strand, within ycf45 at 616.937 kb on + strand, within ycf45 at 617.042 kb on - strand, within ycf45 at 617.067 kb on - strand, within ycf45 at 617.140 kb on + strand, within ycf45 at 617.152 kb on + strand, within ycf45 at 617.154 kb on + strand, within ycf45 at 617.167 kb on + strand, within ycf45 at 617.175 kb on - strand, within ycf45 at 617.300 kb on + strand, within ycf45 at 617.351 kb on + strand, within ycf45 at 617.378 kb on - strand, within ycf45 at 617.383 kb on - strand, within ycf45 at 617.386 kb on - strand, within ycf45 at 617.389 kb on + strand, within ycf45 at 617.389 kb on + strand, within ycf45 at 617.397 kb on - strand, within ycf45 at 617.397 kb on - strand, within ycf45 at 617.411 kb on + strand, within ycf45 at 617.414 kb on - strand, within ycf45
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep1 remove 614,394 + -1.6 614,606 - trxB Synpcc7942_0623 0.46 +0.3 614,610 + trxB Synpcc7942_0623 0.46 -2.4 614,622 + trxB Synpcc7942_0623 0.47 -0.6 614,630 - trxB Synpcc7942_0623 0.48 -2.2 614,630 - trxB Synpcc7942_0623 0.48 -1.2 614,630 - trxB Synpcc7942_0623 0.48 -2.1 614,630 - trxB Synpcc7942_0623 0.48 -1.5 614,780 - trxB Synpcc7942_0623 0.59 -0.7 614,821 + trxB Synpcc7942_0623 0.62 -0.1 614,899 - trxB Synpcc7942_0623 0.67 -2.1 614,966 - trxB Synpcc7942_0623 0.72 -0.1 615,004 + trxB Synpcc7942_0623 0.75 -1.6 615,034 - trxB Synpcc7942_0623 0.77 -0.9 615,044 - trxB Synpcc7942_0623 0.78 -0.9 615,046 - trxB Synpcc7942_0623 0.78 -0.5 615,048 + trxB Synpcc7942_0623 0.78 -0.9 615,048 + trxB Synpcc7942_0623 0.78 -1.0 615,095 - trxB Synpcc7942_0623 0.81 -2.4 615,097 + trxB Synpcc7942_0623 0.82 -1.2 615,130 - trxB Synpcc7942_0623 0.84 -2.0 615,166 + trxB Synpcc7942_0623 0.87 -0.5 615,174 - trxB Synpcc7942_0623 0.87 -0.4 615,174 - trxB Synpcc7942_0623 0.87 +0.5 615,242 + -0.6 615,261 - +1.6 615,264 + +0.1 615,264 + -0.7 615,344 + +1.2 615,351 + +1.9 615,353 + +1.1 615,353 + -0.0 615,386 + -1.4 615,396 - -0.6 615,404 + -0.7 615,467 + ldpA Synpcc7942_0624 0.10 -1.0 615,467 + ldpA Synpcc7942_0624 0.10 -0.5 615,474 - ldpA Synpcc7942_0624 0.11 -0.7 615,475 - ldpA Synpcc7942_0624 0.11 -0.0 615,519 + ldpA Synpcc7942_0624 0.15 +0.5 615,593 + ldpA Synpcc7942_0624 0.22 -0.7 615,593 + ldpA Synpcc7942_0624 0.22 -2.2 615,658 - ldpA Synpcc7942_0624 0.28 +0.1 615,662 + ldpA Synpcc7942_0624 0.28 -0.5 615,670 - ldpA Synpcc7942_0624 0.29 -0.5 615,670 - ldpA Synpcc7942_0624 0.29 -2.1 615,670 - ldpA Synpcc7942_0624 0.29 -0.8 615,751 + ldpA Synpcc7942_0624 0.37 -2.3 615,786 + ldpA Synpcc7942_0624 0.40 -0.7 615,902 + ldpA Synpcc7942_0624 0.51 -0.4 615,975 + ldpA Synpcc7942_0624 0.58 -0.4 615,983 - ldpA Synpcc7942_0624 0.59 -0.8 616,075 - ldpA Synpcc7942_0624 0.67 +0.3 616,089 - ldpA Synpcc7942_0624 0.69 -1.5 616,093 + ldpA Synpcc7942_0624 0.69 -1.8 616,195 + ldpA Synpcc7942_0624 0.79 -0.7 616,321 + -0.0 616,361 + -1.8 616,361 + -0.9 616,369 - -0.2 616,371 + +0.5 616,376 + -0.7 616,413 + -0.2 616,420 + +0.6 616,421 - -0.2 616,493 + -0.5 616,531 + -0.9 616,585 + -0.7 616,605 - ycf45 Synpcc7942_0625 0.11 +1.6 616,621 + ycf45 Synpcc7942_0625 0.11 +0.2 616,654 + ycf45 Synpcc7942_0625 0.13 -0.5 616,659 + ycf45 Synpcc7942_0625 0.14 +0.1 616,720 + ycf45 Synpcc7942_0625 0.17 +0.1 616,728 - ycf45 Synpcc7942_0625 0.17 +0.5 616,744 - ycf45 Synpcc7942_0625 0.18 +0.2 616,744 - ycf45 Synpcc7942_0625 0.18 +0.1 616,755 + +0.5 616,788 - ycf45 Synpcc7942_0625 0.21 -0.0 616,790 + ycf45 Synpcc7942_0625 0.21 +0.5 616,800 + ycf45 Synpcc7942_0625 0.22 -0.2 616,808 - ycf45 Synpcc7942_0625 0.22 -1.4 616,840 - ycf45 Synpcc7942_0625 0.24 -0.1 616,840 - ycf45 Synpcc7942_0625 0.24 +0.6 616,865 - ycf45 Synpcc7942_0625 0.25 +0.9 616,867 + ycf45 Synpcc7942_0625 0.25 +0.2 616,885 + ycf45 Synpcc7942_0625 0.26 -0.1 616,885 + ycf45 Synpcc7942_0625 0.26 -0.8 616,918 + ycf45 Synpcc7942_0625 0.28 -0.8 616,928 + ycf45 Synpcc7942_0625 0.29 -0.6 616,936 - ycf45 Synpcc7942_0625 0.29 -0.0 616,936 - ycf45 Synpcc7942_0625 0.29 +0.2 616,937 + ycf45 Synpcc7942_0625 0.29 +0.4 617,042 - ycf45 Synpcc7942_0625 0.35 +0.2 617,067 - ycf45 Synpcc7942_0625 0.37 -0.4 617,140 + ycf45 Synpcc7942_0625 0.41 +0.3 617,152 + ycf45 Synpcc7942_0625 0.41 +1.1 617,154 + ycf45 Synpcc7942_0625 0.42 +0.3 617,167 + ycf45 Synpcc7942_0625 0.42 -1.0 617,175 - ycf45 Synpcc7942_0625 0.43 -0.5 617,300 + ycf45 Synpcc7942_0625 0.50 +0.8 617,351 + ycf45 Synpcc7942_0625 0.53 -0.3 617,378 - ycf45 Synpcc7942_0625 0.54 +1.1 617,383 - ycf45 Synpcc7942_0625 0.55 +1.0 617,386 - ycf45 Synpcc7942_0625 0.55 -0.2 617,389 + ycf45 Synpcc7942_0625 0.55 +0.6 617,389 + ycf45 Synpcc7942_0625 0.55 +0.3 617,397 - ycf45 Synpcc7942_0625 0.55 -0.2 617,397 - ycf45 Synpcc7942_0625 0.55 -0.4 617,411 + ycf45 Synpcc7942_0625 0.56 +0.1 617,414 - ycf45 Synpcc7942_0625 0.56 +0.9
Or see this region's nucleotide sequence