Experiment: Light Dark first sampling rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0622 and trxB are separated by 59 nucleotides trxB and ldpA are separated by 9 nucleotides
Synpcc7942_0622: Synpcc7942_0622 - ATPase, at 611,915 to 613,912
_0622
Synpcc7942_0623: trxB - thioredoxin reductase, at 613,972 to 615,351
trxB
Synpcc7942_0624: ldpA - light dependent period, at 615,361 to 616,419
ldpA
Position (kb) 613
614
615
616 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 613.218 kb on + strand, within Synpcc7942_0622 at 613.223 kb on - strand, within Synpcc7942_0622 at 613.241 kb on - strand, within Synpcc7942_0622 at 613.248 kb on - strand, within Synpcc7942_0622 at 613.291 kb on - strand, within Synpcc7942_0622 at 613.467 kb on - strand, within Synpcc7942_0622 at 613.467 kb on - strand, within Synpcc7942_0622 at 613.490 kb on - strand, within Synpcc7942_0622 at 613.519 kb on + strand, within Synpcc7942_0622 at 613.524 kb on + strand, within Synpcc7942_0622 at 613.527 kb on + strand, within Synpcc7942_0622 at 613.528 kb on - strand, within Synpcc7942_0622 at 613.626 kb on + strand, within Synpcc7942_0622 at 613.642 kb on - strand, within Synpcc7942_0622 at 613.770 kb on - strand at 613.811 kb on - strand at 613.815 kb on + strand at 613.815 kb on + strand at 613.815 kb on + strand at 613.823 kb on - strand at 613.866 kb on - strand at 613.894 kb on + strand at 613.907 kb on + strand at 613.916 kb on + strand at 613.932 kb on - strand at 614.041 kb on + strand at 614.042 kb on - strand at 614.067 kb on - strand at 614.067 kb on - strand at 614.106 kb on + strand at 614.125 kb on - strand, within trxB at 614.142 kb on + strand, within trxB at 614.159 kb on - strand, within trxB at 614.170 kb on - strand, within trxB at 614.180 kb on - strand, within trxB at 614.187 kb on + strand, within trxB at 614.207 kb on + strand, within trxB at 614.214 kb on + strand, within trxB at 614.337 kb on + strand, within trxB at 614.394 kb on + strand at 614.606 kb on - strand, within trxB at 614.610 kb on + strand, within trxB at 614.622 kb on + strand, within trxB at 614.630 kb on - strand, within trxB at 614.630 kb on - strand, within trxB at 614.630 kb on - strand, within trxB at 614.630 kb on - strand, within trxB at 614.780 kb on - strand, within trxB at 614.821 kb on + strand, within trxB at 614.899 kb on - strand, within trxB at 614.966 kb on - strand, within trxB at 615.004 kb on + strand, within trxB at 615.034 kb on - strand, within trxB at 615.044 kb on - strand, within trxB at 615.046 kb on - strand, within trxB at 615.048 kb on + strand, within trxB at 615.048 kb on + strand, within trxB at 615.095 kb on - strand, within trxB at 615.097 kb on + strand, within trxB at 615.130 kb on - strand, within trxB at 615.166 kb on + strand, within trxB at 615.174 kb on - strand, within trxB at 615.174 kb on - strand, within trxB at 615.242 kb on + strand at 615.261 kb on - strand at 615.264 kb on + strand at 615.264 kb on + strand at 615.344 kb on + strand at 615.351 kb on + strand at 615.353 kb on + strand at 615.353 kb on + strand at 615.386 kb on + strand at 615.396 kb on - strand at 615.404 kb on + strand at 615.467 kb on + strand, within ldpA at 615.467 kb on + strand, within ldpA at 615.474 kb on - strand, within ldpA at 615.475 kb on - strand, within ldpA at 615.519 kb on + strand, within ldpA at 615.593 kb on + strand, within ldpA at 615.593 kb on + strand, within ldpA at 615.658 kb on - strand, within ldpA at 615.662 kb on + strand, within ldpA at 615.670 kb on - strand, within ldpA at 615.670 kb on - strand, within ldpA at 615.670 kb on - strand, within ldpA at 615.751 kb on + strand, within ldpA at 615.786 kb on + strand, within ldpA at 615.902 kb on + strand, within ldpA at 615.975 kb on + strand, within ldpA at 615.983 kb on - strand, within ldpA at 616.075 kb on - strand, within ldpA at 616.089 kb on - strand, within ldpA at 616.093 kb on + strand, within ldpA at 616.195 kb on + strand, within ldpA at 616.321 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep1 remove 613,218 + Synpcc7942_0622 0.65 -0.9 613,223 - Synpcc7942_0622 0.65 -2.1 613,241 - Synpcc7942_0622 0.66 -0.1 613,248 - Synpcc7942_0622 0.67 -1.4 613,291 - Synpcc7942_0622 0.69 -1.2 613,467 - Synpcc7942_0622 0.78 -0.7 613,467 - Synpcc7942_0622 0.78 +0.4 613,490 - Synpcc7942_0622 0.79 -0.6 613,519 + Synpcc7942_0622 0.80 -0.6 613,524 + Synpcc7942_0622 0.81 +0.5 613,527 + Synpcc7942_0622 0.81 -1.2 613,528 - Synpcc7942_0622 0.81 -2.8 613,626 + Synpcc7942_0622 0.86 -2.8 613,642 - Synpcc7942_0622 0.86 -0.9 613,770 - -1.6 613,811 - -0.7 613,815 + -1.4 613,815 + -1.6 613,815 + +0.5 613,823 - -0.3 613,866 - -1.2 613,894 + -0.4 613,907 + +0.5 613,916 + +0.2 613,932 - +0.1 614,041 + +0.5 614,042 - -1.2 614,067 - -0.8 614,067 - +0.1 614,106 + -1.5 614,125 - trxB Synpcc7942_0623 0.11 -0.4 614,142 + trxB Synpcc7942_0623 0.12 -0.7 614,159 - trxB Synpcc7942_0623 0.14 -0.4 614,170 - trxB Synpcc7942_0623 0.14 -1.2 614,180 - trxB Synpcc7942_0623 0.15 +0.3 614,187 + trxB Synpcc7942_0623 0.16 -0.1 614,207 + trxB Synpcc7942_0623 0.17 -0.2 614,214 + trxB Synpcc7942_0623 0.18 +0.3 614,337 + trxB Synpcc7942_0623 0.26 -1.5 614,394 + -1.6 614,606 - trxB Synpcc7942_0623 0.46 +0.3 614,610 + trxB Synpcc7942_0623 0.46 -2.4 614,622 + trxB Synpcc7942_0623 0.47 -0.6 614,630 - trxB Synpcc7942_0623 0.48 -2.2 614,630 - trxB Synpcc7942_0623 0.48 -1.2 614,630 - trxB Synpcc7942_0623 0.48 -2.1 614,630 - trxB Synpcc7942_0623 0.48 -1.5 614,780 - trxB Synpcc7942_0623 0.59 -0.7 614,821 + trxB Synpcc7942_0623 0.62 -0.1 614,899 - trxB Synpcc7942_0623 0.67 -2.1 614,966 - trxB Synpcc7942_0623 0.72 -0.1 615,004 + trxB Synpcc7942_0623 0.75 -1.6 615,034 - trxB Synpcc7942_0623 0.77 -0.9 615,044 - trxB Synpcc7942_0623 0.78 -0.9 615,046 - trxB Synpcc7942_0623 0.78 -0.5 615,048 + trxB Synpcc7942_0623 0.78 -0.9 615,048 + trxB Synpcc7942_0623 0.78 -1.0 615,095 - trxB Synpcc7942_0623 0.81 -2.4 615,097 + trxB Synpcc7942_0623 0.82 -1.2 615,130 - trxB Synpcc7942_0623 0.84 -2.0 615,166 + trxB Synpcc7942_0623 0.87 -0.5 615,174 - trxB Synpcc7942_0623 0.87 -0.4 615,174 - trxB Synpcc7942_0623 0.87 +0.5 615,242 + -0.6 615,261 - +1.6 615,264 + +0.1 615,264 + -0.7 615,344 + +1.2 615,351 + +1.9 615,353 + +1.1 615,353 + -0.0 615,386 + -1.4 615,396 - -0.6 615,404 + -0.7 615,467 + ldpA Synpcc7942_0624 0.10 -1.0 615,467 + ldpA Synpcc7942_0624 0.10 -0.5 615,474 - ldpA Synpcc7942_0624 0.11 -0.7 615,475 - ldpA Synpcc7942_0624 0.11 -0.0 615,519 + ldpA Synpcc7942_0624 0.15 +0.5 615,593 + ldpA Synpcc7942_0624 0.22 -0.7 615,593 + ldpA Synpcc7942_0624 0.22 -2.2 615,658 - ldpA Synpcc7942_0624 0.28 +0.1 615,662 + ldpA Synpcc7942_0624 0.28 -0.5 615,670 - ldpA Synpcc7942_0624 0.29 -0.5 615,670 - ldpA Synpcc7942_0624 0.29 -2.1 615,670 - ldpA Synpcc7942_0624 0.29 -0.8 615,751 + ldpA Synpcc7942_0624 0.37 -2.3 615,786 + ldpA Synpcc7942_0624 0.40 -0.7 615,902 + ldpA Synpcc7942_0624 0.51 -0.4 615,975 + ldpA Synpcc7942_0624 0.58 -0.4 615,983 - ldpA Synpcc7942_0624 0.59 -0.8 616,075 - ldpA Synpcc7942_0624 0.67 +0.3 616,089 - ldpA Synpcc7942_0624 0.69 -1.5 616,093 + ldpA Synpcc7942_0624 0.69 -1.8 616,195 + ldpA Synpcc7942_0624 0.79 -0.7 616,321 + -0.0
Or see this region's nucleotide sequence